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Update transit to 3.3.7 #35222

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Update transit to 3.3.7 #35222

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@BiocondaBot BiocondaBot commented Jun 5, 2022

Update transit: 3.2.33.3.7

install with bioconda Conda

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Recipe recipes/transit (click to view/edit other files)
Summary TRANSIT
Home http://github.com/mad-lab/transit
Releases https://github.com/mad-lab/transit/tags
Author @mad-lab

This pull request was automatically generated (see docs).

@BiocondaBot BiocondaBot added autobump Automatic Version Update new version labels Jun 5, 2022
@BiocondaBot BiocondaBot changed the title Update transit to 3.2.4 Update transit to 3.2.5 Jun 15, 2022
@BiocondaBot BiocondaBot changed the title Update transit to 3.2.5 Update transit to 3.2.6 Aug 4, 2022
@BiocondaBot BiocondaBot changed the title Update transit to 3.2.6 Update transit to 3.2.7 Sep 22, 2022
@BiocondaBot BiocondaBot changed the title Update transit to 3.2.7 Update transit to 3.2.8 Jul 22, 2023
@BiocondaBot BiocondaBot changed the title Update transit to 3.2.8 Update transit to 3.3.0 Aug 3, 2023
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dpryan79 commented Sep 5, 2023

This can no longer be built, since the statsmodel version it needs is 5 years old and no longer works with modern pandas for any recent python version.

@BiocondaBot BiocondaBot changed the title Update transit to 3.3.0 Update transit to 3.3.1 Oct 18, 2023
@BiocondaBot BiocondaBot changed the title Update transit to 3.3.1 Update transit to 3.3.2 Oct 29, 2023
@BiocondaBot BiocondaBot changed the title Update transit to 3.3.2 Update transit to 3.3.3 Nov 27, 2023
@BiocondaBot BiocondaBot changed the title Update transit to 3.3.3 Update transit to 3.3.4 Feb 17, 2024
@BiocondaBot BiocondaBot changed the title Update transit to 3.3.4 Update transit to 3.3.5 Sep 14, 2024
@BiocondaBot BiocondaBot changed the title Update transit to 3.3.5 Update transit to 3.3.6 Oct 14, 2024
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coderabbitai bot commented Oct 14, 2024

📝 Walkthrough

Walkthrough

The pull request introduces several modifications to the meta.yaml file for the transit package. The version number has been updated from "3.2.3" to "3.3.6" to reflect the latest release. Alongside this version increment, the source URL has been adjusted to direct to the new version's tarball. The SHA256 checksum has been recalibrated to ensure it corresponds to the new source version. Additionally, a new section titled run_exports has been incorporated under the build section, which includes a directive for pinning the subpackage. The license specification has also been refined from "GPL-3" to "GPL-3.0-only." Other sections within the meta.yaml, such as requirements and about, have remained unchanged.

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Actionable comments posted: 0

🧹 Outside diff range and nitpick comments (1)
recipes/transit/meta.yaml (1)

Line range hint 28-28: Update outdated statsmodels dependency.

As mentioned in the PR comments, the current statsmodels requirement (>=0.9,<0.10) is outdated and may cause compatibility issues with modern versions of pandas and recent Python versions.

Please update the statsmodels dependency to a more recent version. You may want to check the compatibility of statsmodels with the other dependencies, especially numpy and scipy. Consider using a more relaxed version specifier to allow for future updates, for example:

- statsmodels >=0.13.0

Also, verify that this updated version is compatible with the new version of transit (3.3.6).

🧰 Tools
🪛 yamllint

[error] 18-18: trailing spaces

(trailing-spaces)


[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

📜 Review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between 2dce037 and 8d4eefa.

📒 Files selected for processing (1)
  • recipes/transit/meta.yaml (2 hunks)
🧰 Additional context used
🔇 Additional comments (4)
recipes/transit/meta.yaml (4)

2-2: Version update looks good, but verify compatibility.

The version update from 3.2.3 to 3.3.6 is consistent with the PR objective. However, this is a significant version bump that might introduce breaking changes or new features.

Please ensure that this new version is compatible with the current dependencies and doesn't introduce any breaking changes. You may want to check the changelog or release notes for version 3.3.6.


16-17: Good addition of run_exports.

The addition of the run_exports section is a good practice. It ensures that when this package is used as a dependency in other packages, it will be correctly pinned.

This helps maintain consistency across the conda ecosystem and prevents potential compatibility issues.


36-36: License specification improved.

The license has been updated from GPL-3 to GPL-3.0-only, which provides more specificity about the license version.

This is a good practice as it removes any ambiguity about which version of the GPL license applies to this package.


10-10: SHA256 checksum updated, verify correctness.

The SHA256 checksum has been updated to match the new version's source tarball.

To ensure the integrity of the package, please verify that this checksum is correct for the v3.3.6 tarball. You can do this by downloading the tarball and computing its SHA256 hash:

Compare the output with the checksum in the meta.yaml file.

@BiocondaBot BiocondaBot changed the title Update transit to 3.3.6 Update transit to 3.3.7 Oct 16, 2024
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