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augustus: add linux-aarch64 build #47056

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augustus: add linux-aarch64 build #47056

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d60e1ad
augustus: add linux-aarch64 build
martin-g Apr 8, 2024
28edf46
Merge branch 'master' into aarch64-augustus
aliciaaevans Jun 25, 2024
36cfe38
Merge branch 'master' into aarch64-augustus
martin-g Sep 9, 2024
9071a48
Merge branch 'master' into aarch64-augustus
martin-g Oct 7, 2024
e48e764
Merge branch 'master' into aarch64-augustus
martin-g Oct 25, 2024
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10 changes: 7 additions & 3 deletions recipes/augustus/meta.yaml
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Expand Up @@ -13,7 +13,9 @@ source:
- patches/utrrnaseq.patch

build:
number: 4
number: 5
run_exports:
- {{ pin_subpackage('augustus', max_pin="x") }}

requirements:
build:
Expand All @@ -22,8 +24,8 @@ requirements:
- {{ compiler('cxx') }}
host:
- zlib
- samtools ==0.1.19
- bamtools
- samtools =>1.19
- bamtools =>2.5.2
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⚠️ Potential issue

Update version specifiers for samtools and bamtools

The version updates for samtools and bamtools are notable:

  1. The samtools version has been significantly bumped from 0.1.19 to 1.19. This is a major version change that may introduce compatibility issues. Please ensure that Augustus is compatible with this newer version of samtools.

  2. The specific version requirement for bamtools (=>2.5.2) is good for reproducibility.

However, there's an issue with the syntax of the version specifiers:

The => operator is not a standard conda version specifier. Instead, use the >= operator for "greater than or equal to". Please update the lines as follows:

- samtools >=1.19
- bamtools >=2.5.2

This change will ensure that conda correctly interprets the version requirements.

- htslib
- gsl
- lp_solve
Expand Down Expand Up @@ -163,6 +165,8 @@ about:
protein alignments and synthenic genomic alignments.'

extra:
additional-platforms:
- linux-aarch64
identifiers:
- biotools:augustus
- doi:10.1093/bioinformatics/btr010
Expand Down