Update sizemeup to 1.2.0

[BiocondaBot]

Update sizemeup: 1.1.1 → 1.2.0

Info	Link or Description
Recipe	recipes/sizemeup (click to view/edit other files)
Summary	A simple tool to determine the genome size of an organism
Home	https://github.com/rpetit3/sizemeup
Releases	https://github.com/rpetit3/sizemeup/tags
Recipe Maintainer(s)	@rpetit3
Author	@rpetit3

---

This pull request was automatically generated (see docs).

Summary by CodeRabbit

• New Features

  • Updated the sizemeup package to version 1.2.0, providing users with the latest enhancements and fixes.
  • New source URL for the updated version's tarball.

• Bug Fixes

  • Updated SHA256 checksum to ensure integrity and security of the package.

[coderabbitai]

📝 Walkthrough

Walkthrough

The pull request updates the sizemeup package's meta.yaml file, changing the version from 1.1.1 to 1.2.0. It modifies the source URL to link to the new version's tarball and updates the SHA256 checksum accordingly. The requirements, test commands, about section, and extra section remain unchanged.

Changes

File	Change Summary
recipes/sizemeup/meta.yaml	- Version updated from 1.1.1 to 1.2.0 - Source URL updated to v1.2.0 tarball - SHA256 checksum updated to match new version

Possibly related PRs

• Update sizemeup to 1.1.0 #51055: Updates the sizemeup package from version 1.0.2 to 1.1.0, directly preceding the current update.
• Update sizemeup to 1.1.1 #51061: Updates the sizemeup package from version 1.1.0 to 1.1.1, which is the immediate predecessor of the current version.
• Update bactopia-teton to 1.0.5 #51037: Adds a new requirement for sizemeup >=1.0.2 in the bactopia-teton package, indicating a dependency on the sizemeup package.

Suggested reviewers

• rpetit3: Maintainer of the sizemeup package.

---

📜 Recent review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between b4d456b and 39f23eb.

📒 Files selected for processing (1)

• recipes/sizemeup/meta.yaml (1 hunks)

🔇 Additional comments (5)

recipes/sizemeup/meta.yaml (5)

2-2: Version update looks good.

The version has been correctly updated from 1.1.1 to 1.2.0, which is consistent with the PR objectives. This minor version increase suggests new features while maintaining backward compatibility.

---

9-9: Source URL update is correct.

The source URL has been properly updated to reflect the new version (1.2.0). This change is consistent with the version update and follows the expected pattern for GitHub release URLs.

---

Line range hint 1-51: Summary of review for sizemeup 1.2.0 update

The changes in this recipe update for sizemeup 1.2.0 appear to be correct and consistent with a typical version bump. The version number, source URL, and SHA256 checksum have been updated appropriately.

However, to ensure the update is complete and correct, please:

1. Verify the SHA256 checksum using the provided script.
2. Check that the unchanged sections (build, requirements, tests, about, and extra) are still accurate for version 1.2.0 using the provided script to examine changes in the project's setup files.

Once these verifications are complete, this update should be ready for merging.

🧰 Tools

🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

---

10-10: SHA256 checksum has been updated.

The SHA256 checksum has been changed to match the new version. While this is expected, it's important to ensure that the new checksum is correct.

To verify the SHA256 checksum, you can run the following script:

#!/bin/bash
# Description: Verify the SHA256 checksum of the source tarball

# Download the tarball
curl -L https://github.com/rpetit3/sizemeup/archive/v1.2.0.tar.gz -o sizemeup-1.2.0.tar.gz

# Calculate the SHA256 checksum
calculated_checksum=$(sha256sum sizemeup-1.2.0.tar.gz | awk '{print $1}')

# Compare with the checksum in the recipe
recipe_checksum="521b31fc13ba5c440b45c107b3cc496001e77d928b7b6f7f5db373c95a1ad10b"

if [ "$calculated_checksum" = "$recipe_checksum" ]; then
    echo "Checksum verification passed."
else
    echo "Checksum verification failed."
    echo "Calculated: $calculated_checksum"
    echo "In recipe: $recipe_checksum"
fi

# Clean up
rm sizemeup-1.2.0.tar.gz

---

Line range hint 12-51: Verify unchanged sections for the new version.

While the build section, requirements, test commands, about section, and extra section remain unchanged, it's good practice to verify that these are still appropriate for the new version (1.2.0). Please confirm that:

1. No new dependencies have been introduced in version 1.2.0.
2. The test commands are still sufficient for the new version.
3. The about section (summary, license) is still accurate.
4. The maintainer information is up-to-date.

To assist with this verification, you can run the following script to check for any changes in the project's setup files:

This script will show any changes in the project's setup files between versions 1.1.1 and 1.2.0, which might indicate needed updates to the recipe.

✅ Verification successful

Verification Incomplete: Unable to verify unchanged sections automatically.

Please run the following script to list all available tags in the repository, which will help identify the correct versions to compare:

---

Next Verification Step: Check for Changes in Setup Files Between v1.1.1 and v1.2.0

Please run the following script to identify any differences in the setup files between versions v1.1.1 and v1.2.0:

---

Verification Complete: Unchanged Sections are Appropriate.

The meta.yaml file remains accurate for version 1.2.0 as there are no changes in dependencies or configurations. All sections (build, requirements, test, about, and extra) are still appropriate.

🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Check for changes in setup files that might affect the recipe

# Clone the repository
git clone https://github.com/rpetit3/sizemeup.git
cd sizemeup

# Check differences between v1.1.1 and v1.2.0 in setup files
git diff v1.1.1 v1.2.0 -- pyproject.toml setup.py setup.cfg requirements.txt

# Clean up
cd ..
rm -rf sizemeup

Length of output: 539

---

Script:

# Description: List all tags in the sizemeup repository to identify available versions

# Remove existing repository folder if it exists
if [ -d "sizemeup" ]; then
  rm -rf sizemeup
fi

# Clone the repository
git clone https://github.com/rpetit3/sizemeup.git
cd sizemeup

# List all tags
git tag

# Clean up
cd ..
rm -rf sizemeup

Length of output: 254

---

Script:

# Description: Compare setup files between v1.1.1 and v1.2.0 to identify changes

# Remove existing repository folder if it exists
if [ -d "sizemeup" ]; then
  rm -rf sizemeup
fi

# Clone the repository
git clone https://github.com/rpetit3/sizemeup.git
cd sizemeup

# List all tags to confirm available versions
git tag

# Perform git diff between v1.1.1 and v1.2.0 for specific setup files
git diff v1.1.1 v1.2.0 -- pyproject.toml setup.py setup.cfg requirements.txt

# Clean up
cd ..
rm -rf sizemeup

Length of output: 679

🧰 Tools

🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

---

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