Update viroconstrictor to 1.4.6

[BiocondaBot]

Update viroconstrictor: 1.4.5 → 1.4.6

Info	Link or Description
Recipe	recipes/viroconstrictor (click to view/edit other files)
Summary	ViroConstrictor is a flexible pipeline for analysis of targeted viral sequencing data
Home	https://rivm-bioinformatics.github.io/ViroConstrictor/
Releases	https://github.com/RIVM-bioinformatics/ViroConstrictor/tags
Recipe Maintainer(s)	@florianzwagemaker, @raaijmag, @wolthuisr, @ids-bioinformatics
Author	@RIVM-bioinformatics

---

This pull request was automatically generated (see docs).

[coderabbitai]

📝 Walkthrough

Walkthrough

The pull request introduces updates to the meta.yaml file for the ViroConstrictor package. The version number has been incremented from "1.4.5" to "1.4.6", reflecting a new release. Alongside this version change, the SHA256 checksum has been updated to correspond with the new version's source tarball. Additionally, the build number has been modified from 1 to 0. While the entry points for the package have not changed, the indentation for these entry points has been corrected for consistency. The requirements section remains unchanged, with all dependencies listed retaining their original versions and specifications.

Possibly related PRs

• Update recipe for ViroConstrictor #51038: This PR updates the meta.yaml file for the ViroConstrictor package, including a version increment and changes to the SHA256 checksum, which are directly related to the changes made in the main PR.

---

📜 Recent review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between a60c239 and 944eba2.

📒 Files selected for processing (1)

• recipes/viroconstrictor/meta.yaml (2 hunks)

🧰 Additional context used

🔇 Additional comments (4)

recipes/viroconstrictor/meta.yaml (4)

2-2: Version update looks good.

The version has been correctly updated to 1.4.6, which aligns with the PR objective.

---

20-20: Build number reset is correct.

The build number has been appropriately reset to 0 for the new version, which is in line with Conda packaging best practices.

---

Line range hint 1-70: Consider verifying dependency versions.

While the version update, SHA256 change, and build number reset are all correct, it might be worth verifying if any of the package dependencies need to be updated for this new version of ViroConstrictor.

To check for any potential dependency updates, you can run the following script:

#!/bin/bash
# Description: Check for newer versions of dependencies

# Function to compare versions
version_gt() { test "$(printf '%s\n' "$@" | sort -V | head -n 1)" != "$1"; }

# Extract dependencies and their versions from meta.yaml
declare -A deps
while IFS=: read -r name version; do
    deps["$name"]="${version## }"
done < <(grep -E '^\s+- [^{]' meta.yaml | sed 's/[>=<]/ /g' | awk '{print $2 " " $3}')

# Check each dependency for newer versions
for dep in "${!deps[@]}"; do
    current="${deps[$dep]}"
    latest=$(conda search --json "$dep" | jq -r '.[] | .[].version' | sort -V | tail -n1)
    if [ -n "$latest" ] && version_gt "$latest" "$current"; then
        echo "Update available for $dep: $current -> $latest"
    fi
done

This script will help identify if there are any newer versions available for the dependencies listed in the meta.yaml file.

🧰 Tools

🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

---

10-10: SHA256 checksum updated.

The SHA256 checksum has been updated, which is necessary for the new version. However, it's important to verify its correctness.

To verify the SHA256 checksum, you can run the following script:

---

Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media?

❤️ Share

• X
• Mastodon
• Reddit
• LinkedIn

🪧 Tips

Chat

There are 3 ways to chat with CodeRabbit:

• Review comments: Directly reply to a review comment made by CodeRabbit. Example:
  • I pushed a fix in commit <commit_id>, please review it.
  • Generate unit testing code for this file.
  • Open a follow-up GitHub issue for this discussion.
• Files and specific lines of code (under the "Files changed" tab): Tag @coderabbitai in a new review comment at the desired location with your query. Examples:
  • @coderabbitai generate unit testing code for this file.
  • @coderabbitai modularize this function.
• PR comments: Tag @coderabbitai in a new PR comment to ask questions about the PR branch. For the best results, please provide a very specific query, as very limited context is provided in this mode. Examples:
  • @coderabbitai gather interesting stats about this repository and render them as a table. Additionally, render a pie chart showing the language distribution in the codebase.
  • @coderabbitai read src/utils.ts and generate unit testing code.
  • @coderabbitai read the files in the src/scheduler package and generate a class diagram using mermaid and a README in the markdown format.
  • @coderabbitai help me debug CodeRabbit configuration file.

Note: Be mindful of the bot's finite context window. It's strongly recommended to break down tasks such as reading entire modules into smaller chunks. For a focused discussion, use review comments to chat about specific files and their changes, instead of using the PR comments.

CodeRabbit Commands (Invoked using PR comments)

• @coderabbitai pause to pause the reviews on a PR.
• @coderabbitai resume to resume the paused reviews.
• @coderabbitai review to trigger an incremental review. This is useful when automatic reviews are disabled for the repository.
• @coderabbitai full review to do a full review from scratch and review all the files again.
• @coderabbitai summary to regenerate the summary of the PR.
• @coderabbitai resolve resolve all the CodeRabbit review comments.
• @coderabbitai configuration to show the current CodeRabbit configuration for the repository.
• @coderabbitai help to get help.

Other keywords and placeholders

• Add @coderabbitai ignore anywhere in the PR description to prevent this PR from being reviewed.
• Add @coderabbitai summary to generate the high-level summary at a specific location in the PR description.
• Add @coderabbitai anywhere in the PR title to generate the title automatically.

CodeRabbit Configuration File (.coderabbit.yaml)

• You can programmatically configure CodeRabbit by adding a .coderabbit.yaml file to the root of your repository.
• Please see the configuration documentation for more information.
• If your editor has YAML language server enabled, you can add the path at the top of this file to enable auto-completion and validation: # yaml-language-server: $schema=https://coderabbit.ai/integrations/schema.v2.json

Documentation and Community

• Visit our Documentation for detailed information on how to use CodeRabbit.
• Join our Discord Community to get help, request features, and share feedback.
• Follow us on X/Twitter for updates and announcements.