new version

[ftegenfe]

Update to version 3.5.0

[coderabbitai]

📝 Walkthrough

📝 Walkthrough

Walkthrough

The pull request introduces updates to the meta.yaml file for the orthologer package. The version number is incremented from 3.4.2 to 3.5.0, and a new SHA256 checksum is provided. The requirements section is modified to include busco >= 5.7.0 as a run dependency. Additionally, the summary has been revised from "Find orthologous genes as well as mapping to OrthoDB." to "Establish orthology among fasta files." A new description field is added, detailing the functionality as "Map genes to OrthoDB as well as finding orthology among a set of fasta files." Furthermore, the indentation for diamond and biopython in the requirements section has been corrected. The about section retains existing fields but now reflects the updated summary and description.

Possibly related PRs

• upd orthologer to 3.4.2 #51128: This PR updates the orthologer package to version 3.4.2, which is directly related to the main PR that updates the same package to version 3.5.0. Both PRs involve changes to the meta.yaml file for the same package.

Suggested labels

autobump, new version

Suggested reviewers

• berkelem

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📜 Recent review details

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Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between 9ae11da and 6c29000.

📒 Files selected for processing (1)

• recipes/orthologer/meta.yaml (3 hunks)

🚧 Files skipped from review as they are similar to previous changes (1)

• recipes/orthologer/meta.yaml

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[coderabbitai]

Actionable comments posted: 0

🧹 Outside diff range and nitpick comments (1)

recipes/orthologer/meta.yaml (1)

55-55: Consider revising the summary for more specificity.

The updated summary "Establish orthology among fasta files." is concise but less specific about the package's full functionality compared to the previous version. It no longer mentions mapping to OrthoDB, which seems to be a key feature of the package.

Consider revising the summary to include more specific information about the package's capabilities. For example:

summary: Establish orthology among fasta files and map genes to OrthoDB.

This revision maintains brevity while capturing both main functionalities of the package.

📜 Review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between 4c7a9dc and 9ae11da.

📒 Files selected for processing (1)

• recipes/orthologer/meta.yaml (3 hunks)

🧰 Additional context used

🔇 Additional comments (4)

recipes/orthologer/meta.yaml (4)

56-56: Description addition is beneficial.

The new description "Map genes to OrthoDB as well as finding orthology among a set of fasta files." provides a clear and concise explanation of the package's main functionalities. It complements the summary well by offering additional details about the package's capabilities.

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Line range hint 1-76: Overall changes are consistent and appropriate for a version update.

The updates to the meta.yaml file are consistent with a version upgrade from 3.4.2 to 3.5.0. The changes include:

1. Updated version and checksum
2. Added new dependency (busco)
3. Updated summary
4. Added description

These changes maintain the correct structure for a Conda package recipe and provide updated information about the package's functionality and requirements.

To ensure all necessary updates have been made, please verify:

1. The package builds successfully with the new configuration.
2. The package's documentation or release notes confirm the need for the new busco dependency.
3. All functionalities mentioned in the summary and description are actually provided by version 3.5.0 of the package.

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2-3: Version and checksum update looks good.

The version has been correctly updated to 3.5.0 as per the PR description. The SHA256 checksum has also been updated, which is necessary for the new version.

Please verify that the new SHA256 checksum is correct for version 3.5.0 of the package. You can use the following command to check:

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44-44: New dependency added and indentation corrected.

The addition of busco >= 5.7.0 as a run dependency is noted. This is likely related to new features or requirements in version 3.5.0. The indentation for diamond and biopython has also been corrected, improving the YAML file's structure.

Please confirm that version 3.5.0 of orthologer requires busco >= 5.7.0. You can check the package's documentation or release notes to verify this dependency. Also, ensure that this version of busco is available in the bioconda channel.