Update Saccharis

recipes/saccharis/meta.yaml

@@ -1,14 +1,16 @@
 {% set name = "SACCHARIS" %}
 {% set version = "2.0.1.dev21" %}
-{% set hash = "1e5c4bb35414d1421f4debcf0ecb53cd62a853b40a887486a44c2c7a8929b113" %}
+{% set hash = "B4D656E42C87ED46EC555445BBF3EB4496C6463ACE556D9FE0E43A3C1BE2CDB6" %}
 
 
 package:
   name: "{{ name|lower }}"
   version: "{{ version }}"
 
 source:
-  url: https://github.com/saccharis/SACCHARIS_2/releases/download/v{{ version }}/saccharis-{{ version }}.tar.gz
+  #  url: https://github.com/saccharis/SACCHARIS_2/releases/download/v{{ version }}/saccharis-{{ version }}.tar.gz
+  url: https://github.com/saccharis/SACCHARIS_2/releases/download/v2.0.1.dev21/saccharis-2.0.1.dev21_1.tar.gz
+
   sha256: {{ hash|lower }}
 
 build:
@@ -23,10 +25,10 @@ build:
     - saccharis.rename_user_file = saccharis.utils.UserFastaRename:cli_main
     - saccharis.prune_seqs = saccharis.ExtractAndPruneCAZymes:cli_prune_seqs
     - saccharis.screen_cazome = saccharis.ScreenUserFile:cli_cazome
-    - saccharis.show_family_categories = saccharis.utils.FamilyCategories:show_categories
+    - saccharis.show_family_categories = saccharis.utils.FamilyCategories:cli_show_categories
     - saccharis-gui = saccharis.gui.PipelineGUI:main
     - saccharis.config = saccharis.utils.AdvancedConfig:cli_config
-    - saccharis.update_db = saccharis.ExtractAndPruneCAZymes:update_hmms
+    - saccharis.update_db = saccharis.utils.DatabaseDownload:cli_update_hmms
   run_exports:
     - {{ pin_subpackage("saccharis", max_pin="x.x") }}
 
@@ -71,13 +73,19 @@ test:
     # pipe test output to null for these tests, per https://bioconda.github.io/contributor/guidelines.html#tests
     - saccharis -v > /dev/null
     - saccharis.show_family_categories > /dev/null
-#    below tests need to be commented out for successful build on bioconda because there is no file write permission
-#    - saccharis.make_family_files
+    - saccharis.make_family_files --help > /dev/null
+    - saccharis.add_family_category --help > /dev/null
+    - saccharis.rename_user_file --help > /dev/null
+    - saccharis.prune_seqs --help > /dev/null
+    - saccharis.screen_cazome --help > /dev/null
+    - saccharis.config --help > /dev/null
+    - saccharis.update_db --help > /dev/null
 
 about:
   home: https://github.com/saccharis/SACCHARIS_2
   dev_url: https://github.com/saccharis/SACCHARIS_2
-  description: Bioinformatics pipeline to automate phylogenetic analysis of CAZyme families in FASTA sequences via creation of phylogenetic trees.
+  description: Bioinformatics pipeline to automate phylogenetic analysis of CAZyme families in FASTA sequences via
+    creation of phylogenetic trees.
   license: GPL-3.0-or-later
   license_family: GPL3
   license_file: LICENSE