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Update ntlink to 1.3.11 #51348

Merged
merged 1 commit into from
Oct 12, 2024
Merged

Update ntlink to 1.3.11 #51348

merged 1 commit into from
Oct 12, 2024

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Update ntlink: 1.3.101.3.11

install with bioconda Conda

Info Link or Description
Recipe recipes/ntlink (click to view/edit other files)
Summary Genome assembly scaffolder using long reads and minimizers
Home https://github.com/bcgsc/ntLink
Releases
Author @bcgsc

This pull request was automatically generated (see docs).

@BiocondaBot BiocondaBot added autobump Automatic Version Update new version labels Oct 12, 2024
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coderabbitai bot commented Oct 12, 2024

📝 Walkthrough

Walkthrough

The pull request introduces an update to the meta.yaml file for the ntlink package. The primary change involves incrementing the package version from "1.3.10" to "1.3.11". Alongside this version update, the source URL has been adjusted to direct to the tarball of the new version. The SHA256 checksum has also been modified to correspond with the updated version's release. Additionally, the build number has been reset from 2 to 0. Other components of the meta.yaml file, such as package requirements and test commands, remain unchanged.

Possibly related PRs

  • Update protgraph to 0.3.11 #51164: The protgraph package update involves a similar change of incrementing the version number and updating the SHA256 checksum in the meta.yaml file, just like the changes made in the ntlink package.
  • Update ngs-tools to 1.8.6 #51240: The ngs-tools package update also includes a version increment and SHA256 checksum update in the meta.yaml file, paralleling the changes in the ntlink package.
  • Update delly to 1.3.1 #51266: The delly package update reflects a version change and SHA256 checksum update in the meta.yaml file, similar to the modifications in the ntlink package.
  • Update ntroot to 1.1.5 #51347: The ntroot package update involves a version increment and SHA256 checksum update in the meta.yaml file, which aligns with the changes made in the ntlink package.

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Actionable comments posted: 0

🧹 Outside diff range and nitpick comments (1)
recipes/ntlink/meta.yaml (1)

9-9: SHA256 update is correct, but remove trailing spaces.

The SHA256 checksum has been updated correctly for the new version. However, there are trailing spaces at the end of this line that should be removed.

Please apply the following change to remove the trailing spaces:

-  sha256: ca92bd4eb4cd6f2f81db54faaeaaf4686236f42db4b6f274f552a52a8460b869 
+  sha256: ca92bd4eb4cd6f2f81db54faaeaaf4686236f42db4b6f274f552a52a8460b869
🧰 Tools
🪛 yamllint

[error] 9-9: trailing spaces

(trailing-spaces)

📜 Review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between 7462881 and 488cdba.

📒 Files selected for processing (1)
  • recipes/ntlink/meta.yaml (1 hunks)
🧰 Additional context used
🪛 yamllint
recipes/ntlink/meta.yaml

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)


[error] 9-9: trailing spaces

(trailing-spaces)

🔇 Additional comments (3)
recipes/ntlink/meta.yaml (3)

1-1: Version update looks good.

The version has been correctly updated to "1.3.11" as per the PR objectives. This change is appropriate for the package update.

Note: The static analysis tool flagged a syntax error on this line, but this is a false positive. The {% set version = "1.3.11" %} syntax is valid Jinja2 template syntax commonly used in Conda recipes.

🧰 Tools
🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)


12-12: Build number reset is correct.

The build number has been appropriately reset to 0 for the new version. This is the correct practice when updating to a new version of the package.


Line range hint 1-45: Verify package requirements and test commands for the new version.

The version update, SHA256 change, and build number reset have been implemented correctly. However, it's important to ensure that the package requirements and test commands are still valid for the new version.

Please run the following script to check if there have been any significant changes in the package that might require updates to the requirements or test commands:

Review the output to determine if any updates to the requirements or test commands are necessary for version 1.3.11.

🧰 Tools
🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)


[error] 9-9: trailing spaces

(trailing-spaces)

@bgruening bgruening merged commit dd3c042 into master Oct 12, 2024
7 checks passed
@bgruening bgruening deleted the bump/ntlink branch October 12, 2024 07:11
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