Update pybiolib to 1.2.197

[BiocondaBot]

Update pybiolib: 1.2.188 → 1.2.197

Info	Link or Description
Recipe	recipes/pybiolib (click to view/edit other files)
Summary	BioLib Python Client
Home	https://github.com/biolib
Releases	https://pypi.org/pypi/pybiolib/json
Recipe Maintainer(s)	@acaprez

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This pull request was automatically generated (see docs).

[coderabbitai]

📝 Walkthrough

Walkthrough

The pull request involves modifications to the meta.yaml file for the pybiolib package. The primary changes include an increment in the version number from 1.2.188 to 1.2.197. Alongside this version update, the SHA256 checksum for the source tarball has been updated from 7c0ecd9edbbd94b5aaddf7d412d42d5e24de9d705bbf70422175e9bae6a35bae to cb1bd9b9ae34842a3b2eeb5b7cb1590a42fdd94ece8ec604e187436cfa352c66. No additional alterations to the structure or content of the meta.yaml file were made in this update.

Possibly related PRs

• Update pybiolib to 1.2.181 #51015: Updates the pybiolib package version from 1.2.174 to 1.2.181, a direct predecessor to the version updated in the main PR.
• Update pybiolib to 1.2.185 #51053: Updates the pybiolib package version from 1.2.181 to 1.2.185, also preceding the version in the main PR.
• Update pybiolib to 1.2.188 #51299: Updates the pybiolib package version from 1.2.185 to 1.2.188, which directly leads up to the version updated in the main PR.

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📜 Recent review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between 9b25c3e and be84df4.

📒 Files selected for processing (1)

• recipes/pybiolib/meta.yaml (1 hunks)

🧰 Additional context used

🔇 Additional comments (3)

recipes/pybiolib/meta.yaml (3)

2-2: Version update looks good.

The version has been correctly updated from 1.2.188 to 1.2.197, which is consistent with the PR objectives.

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10-10: SHA256 checksum update looks correct.

The SHA256 checksum has been updated, which is necessary for the new version of the package. However, it's important to verify that this checksum is correct for the new version of the pybiolib package.

To verify the checksum, you can run the following script:

#!/bin/bash
# Description: Verify the SHA256 checksum of the pybiolib package

# Extract version and checksum from meta.yaml
version=$(grep 'version = ' recipes/pybiolib/meta.yaml | cut -d'"' -f2)
expected_checksum=$(grep 'sha256:' recipes/pybiolib/meta.yaml | awk '{print $2}')

# Download the package and calculate its checksum
url="https://pypi.io/packages/source/p/pybiolib/pybiolib-${version}.tar.gz"
actual_checksum=$(curl -sL "$url" | sha256sum | awk '{print $1}')

# Compare the checksums
if [ "$actual_checksum" = "$expected_checksum" ]; then
    echo "Checksum verification passed."
else
    echo "Checksum verification failed."
    echo "Expected: $expected_checksum"
    echo "Actual: $actual_checksum"
fi

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Line range hint 1-62: Consider reviewing Python version constraint and runtime dependencies.

While the changes look good, it's worth considering the following:

1. The Python version constraint (>=3.6,<3.13) might need regular updates. Consider if it needs adjustment for this new version.

2. With a new version of pybiolib, some runtime dependencies might need updates. It's worth verifying if all the listed dependencies are still correct and if any new dependencies have been introduced.

To check for any changes in dependencies, you can run:

This script will show any differences in dependencies between the old and new versions.

✅ Verification successful

</run_scripts>

---

Runtime dependencies are consistent between versions 1.2.188 and 1.2.197. The Python version constraint (>=3.6,<3.13) remains appropriate.

🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Compare dependencies between old and new versions

old_version="1.2.188"
new_version="1.2.197"

# Function to extract dependencies
get_deps() {
    version=$1
    url="https://pypi.org/pypi/pybiolib/${version}/json"
    curl -s "$url" | jq -r '.info.requires_dist[]' | sort
}

echo "Old version ($old_version) dependencies:"
get_deps $old_version

echo -e "\nNew version ($new_version) dependencies:"
get_deps $new_version

echo -e "\nDiff:"
diff <(get_deps $old_version) <(get_deps $new_version)

Length of output: 1632

---

Script:

#!/bin/bash
# Description: Compare dependencies between old and new versions of pybiolib

set -e

old_version="1.2.188"
new_version="1.2.197"

# Function to extract dependencies
get_deps() {
    version=$1
    url="https://pypi.org/pypi/pybiolib/${version}/json"
    deps=$(curl -s "$url" | jq -r '.info.requires_dist // []' | sort)
    echo "$deps"
}

# Extract dependencies for old version
echo "Fetching dependencies for old version ($old_version)..."
old_deps=$(get_deps $old_version)

# Extract dependencies for new version
echo "Fetching dependencies for new version ($new_version)..."
new_deps=$(get_deps $new_version)

# Save dependencies to temporary files
echo "$old_deps" > old_deps.txt
echo "$new_deps" > new_deps.txt

# Compare dependencies
echo "Comparing dependencies..."
diff_output=$(diff old_deps.txt new_deps.txt)

# Display the results
if [ -z "$diff_output" ]; then
    echo "No differences found in dependencies between versions $old_version and $new_version."
else
    echo "Differences found in dependencies between versions $old_version and $new_version:"
    echo "$diff_output"
fi

# Clean up temporary files
rm old_deps.txt new_deps.txt

Length of output: 3292

🧰 Tools

🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

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