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Update pggb to 0.7.0 #51436
Update pggb to 0.7.0 #51436
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Original file line number | Diff line number | Diff line change |
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@@ -1,36 +1,38 @@ | ||
{% set name = "pggb" %} | ||
{% set version = "0.6.0" %} | ||
{% set version = "0.7.0" %} | ||
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package: | ||
name: "{{ name }}" | ||
version: "{{ version }}" | ||
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source: | ||
url: https://github.com/pangenome/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz | ||
sha256: e201410e5b7ca7c598267797a7fa30b065a1b2b76ee5c309341a93fc489704f3 | ||
sha256: 1ea167eadd66db7665c8135a629aea046d79491f57227a4a332a376b92caf911 | ||
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build: | ||
noarch: generic | ||
number: 0 | ||
skip: true # [osx] | ||
run_exports: | ||
- {{ pin_subpackage(name, max_pin='x.x') }} | ||
number: 1 | ||
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requirements: | ||
run: | ||
- wfmash ==0.14.0 | ||
- seqwish ==0.7.11 | ||
- smoothxg ==0.8.0 | ||
- odgi ==0.9.0 | ||
- gfaffix ==0.1.5b | ||
- vg ==1.59.0 | ||
- vcfbub ==0.1.1 | ||
- vcflib ==1.0.10 | ||
- multiqc ==1.22 | ||
- python-igraph ==0.11.5 | ||
- bc | ||
- tabix | ||
- gfaffix ==0.1.5b | ||
- gsl 2.7.0 | ||
- multiqc ==1.19 | ||
- odgi ==0.8.6 | ||
- pigz | ||
- bcftools | ||
- seqwish ==0.7.10 | ||
- smoothxg ==0.7.4 | ||
- time | ||
- vg 1.59.0 | ||
- wfmash ==0.13.0 | ||
- python-igraph ==0.10.4 | ||
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test: | ||
commands: | ||
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@@ -40,8 +42,10 @@ about: | |
home: https://github.com/pangenome/pggb | ||
license: MIT | ||
license_file: LICENSE | ||
summary: This pangenome graph construction pipeline renders a collection of sequences into a pangenome graph (in the variation graph model). | ||
summary: PanGenome Graph Building pipeline renders | ||
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. Incomplete package summary The updated summary appears to be truncated and doesn't provide a clear description of the package's functionality. Please revise the summary to accurately and completely describe the purpose of the pggb package. Consider reverting to the previous summary or providing a more comprehensive description: summary: This pangenome graph construction pipeline renders a collection of sequences into a pangenome graph (in the variation graph model). |
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extra: | ||
recipe-maintainers: | ||
- AndreaGuarracino | ||
skip-lints: | ||
- should_be_noarch_generic | ||
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There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. Clarify architecture requirements The addition of Please clarify:
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💡 Codebase verification
Missing
meta.yaml
File in Tagv0.7.0
.The
meta.yaml
file was not found in thepggb
repository at tagv0.7.0
. This may indicate that the file has been moved, renamed, or removed in this version.Please verify the location of the dependencies file or update the review comment to reflect the current structure of the repository.
🔗 Analysis chain
Significant changes in dependencies.
The requirements section has undergone substantial changes:
These changes are likely necessary for the new version of pggb. However, please ensure that:
To verify the dependencies, you can run the following script: