Update mess recipe

[farchaab]

PR to update recipe:

• Bumped minimum python version (to match snakemake's minimal python version)
• Added apptainer as dependency
• Removed mamba dependency
• Bumped rich-click min version

---

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[coderabbitai]

📝 Walkthrough

Walkthrough

The pull request introduces several changes to the meta.yaml file for the "MeSS" package. The version number is updated from 0.9.0 to 0.9.1, reflecting an increment in the build number from 0 to 1. The Python version requirement has been modified from >=3.10 to >=3.11 in both the host and run sections. Additionally, a new dependency on apptainer >=1.3.2 has been added to the run section. The existing pandas dependency has been updated from >=2.2.1 to >=2.2.3, and the rich-click dependency has been revised from >=1.7.4 to >=1.8.3. The script and test sections remain unchanged, as does the run_exports section, which continues to pin the mess subpackage. Overall, the structure of the meta.yaml file remains consistent while incorporating these updates.

Possibly related PRs

• Update PhyloAcc recipe #51090: Updates the Python version requirement in the meta.yaml file from >=3.10 to >=3.11.
• [biobb_common] update 5.0.0 #51335: Changes the Python version requirement in the meta.yaml file from >=3.8.0 to >=3.9.0.
• [biobb_amber] update 5.0.0 #51430: Updates the Python version requirement from >=3.8 to >=3.9 in the meta.yaml file.
• [biobb_analysis] update 5.0.0 #51431: Reflects a similar update, changing the Python version requirement from >=3.8 to >=3.9.
• [biobb_chemistry] update 5.0.0 #51435: Raises the Python version requirement from >=3.8 to >=3.9 in the meta.yaml file.

Suggested labels

please review & merge

Suggested reviewers

• martin-g
• gbayarri

---

📜 Recent review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between 45f417f and 0ddb359.

📒 Files selected for processing (1)

• recipes/mess/meta.yaml (2 hunks)

🧰 Additional context used

🔇 Additional comments (8)

recipes/mess/meta.yaml (8)

13-13: LGTM: Build number increment is appropriate.

The build number has been correctly incremented from 0 to 1. This is the expected practice when updating a package recipe without changing the package version itself.

---

29-29: LGTM: Python version requirement consistently updated.

The minimum Python version has been correctly updated to 3.11 in the run section, maintaining consistency with the host section.

---

35-35: LGTM: Pandas version updated.

The Pandas version requirement has been updated from 2.2.1 to 2.2.3.

---

37-37: LGTM: Rich-click version updated.

The Rich-click version requirement has been updated from 1.7.4 to 1.8.3, which aligns with the PR objectives.

---

30-30: New dependency added: Apptainer.

A new dependency on Apptainer (version >=1.3.2) has been added. This aligns with the PR objectives.

Let's verify if there are any other occurrences of Apptainer in the file:

#!/bin/bash
# Check for other occurrences of Apptainer
grep -n "apptainer" recipes/mess/meta.yaml

---

29-37: Verify Mamba dependency removal.

The PR objectives mention removing the Mamba dependency, but this is not visible in the provided diff.

Let's verify if the Mamba dependency has been removed:

#!/bin/bash
# Check for Mamba dependency
grep -n "mamba" recipes/mess/meta.yaml

---

Line range hint 1-3: Verify package version update.

The AI summary mentions updating the version from 0.9.0 to 0.9.1, but the version in the file is still 0.9.0. This seems inconsistent with the build number increment.

Let's verify if there are any other occurrences of the version number in the file:

#!/bin/bash
# Check for version occurrences
grep -n "0.9." recipes/mess/meta.yaml

---

24-24: LGTM: Python version requirement updated correctly.

The minimum Python version has been increased from 3.10 to 3.11, which aligns with the PR objectives to match Snakemake's requirements.

Let's verify that this change is consistent in the run section:

✅ Verification successful

Verified: Python version requirement is consistently updated in both host and run sections.

🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Verify Python version consistency
grep -n "python >=" recipes/mess/meta.yaml

Length of output: 176

---

Script:

#!/bin/bash
# Corrected script to verify Python version consistency
grep -n "python >=3\.11" recipes/mess/meta.yaml

Length of output: 95

---

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[farchaab]

@BiocondaBot please add label