Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update neat to 4.2.6 #51486

Merged
merged 1 commit into from
Oct 18, 2024
Merged

Update neat to 4.2.6 #51486

merged 1 commit into from
Oct 18, 2024

Conversation

BiocondaBot
Copy link
Collaborator

Update neat: 4.2.54.2.6

install with bioconda Conda

Info Link or Description
Recipe recipes/neat (click to view/edit other files)
Summary Toolset for generating synthethic FASTQ, VCF and BAM files.
Home https://github.com/ncsa/NEAT/
Releases https://github.com/ncsa/NEAT/tags
Author @ncsa

This pull request was automatically generated (see docs).

@BiocondaBot BiocondaBot added autobump Automatic Version Update new version labels Oct 18, 2024
Copy link
Contributor

coderabbitai bot commented Oct 18, 2024

📝 Walkthrough

Walkthrough

This pull request updates the NEAT package version from "4.2.5" to "4.2.6" in the meta.yaml file located in the recipes/neat directory. Alongside the version increment, the SHA256 checksum for the source tarball has been changed from ba3ef6233f236a89fd41af8a52a922e04b48c596d8573675c52da2682aaa4752 to 04348e0539b6259ebd4a48a2c60325f04ee0b49323243ceedd675655ba9f94d6. No additional modifications to the file's structure or content have been made, ensuring that only the versioning and checksum information is updated.

Possibly related PRs

  • Update biobb_cmip to 5.0.0 #51455: The changes in this PR involve updating the version and SHA256 checksum in the meta.yaml file, similar to the version and checksum updates in the main PR for the NEAT package.

📜 Recent review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between 9a55dc2 and 3e80471.

📒 Files selected for processing (1)
  • recipes/neat/meta.yaml (1 hunks)
🧰 Additional context used
🔇 Additional comments (3)
recipes/neat/meta.yaml (3)

2-2: LGTM: Version update looks good.

The version has been correctly updated from "4.2.5" to "4.2.6" as per the PR objectives.


Line range hint 1-53: Overall changes look good. Suggest final verification.

The changes in this file are limited to updating the version and SHA256 checksum, which align with the PR objectives. The build number remains at 0, which is correct for a new version. No changes to dependencies suggest that the update is likely compatible with existing configurations.

As a final step, it would be prudent to:

  1. Verify that the new version (4.2.6) is the latest stable release of NEAT.
  2. Confirm that no dependency updates are required for this new version.
  3. Consider running the package tests to ensure everything works as expected with the new version.

To verify the latest version and potential dependency updates, you can run:

This script checks the latest release on GitHub and scans the current dependencies for potential updates.

🧰 Tools
🪛 yamllint

[error] 11-11: trailing spaces

(trailing-spaces)


[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)


10-10: Verify SHA256 checksum.

The SHA256 checksum has been updated, which is expected when updating to a new version. However, it's crucial to ensure that this new checksum corresponds to the correct source tarball for NEAT version 4.2.6.

To verify the SHA256 checksum, you can run the following script:

This script will download the source tarball and compute its SHA256 checksum, then compare it with the one provided in the meta.yaml file.


Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media?

❤️ Share
🪧 Tips

Chat

There are 3 ways to chat with CodeRabbit:

  • Review comments: Directly reply to a review comment made by CodeRabbit. Example:
    • I pushed a fix in commit <commit_id>, please review it.
    • Generate unit testing code for this file.
    • Open a follow-up GitHub issue for this discussion.
  • Files and specific lines of code (under the "Files changed" tab): Tag @coderabbitai in a new review comment at the desired location with your query. Examples:
    • @coderabbitai generate unit testing code for this file.
    • @coderabbitai modularize this function.
  • PR comments: Tag @coderabbitai in a new PR comment to ask questions about the PR branch. For the best results, please provide a very specific query, as very limited context is provided in this mode. Examples:
    • @coderabbitai gather interesting stats about this repository and render them as a table. Additionally, render a pie chart showing the language distribution in the codebase.
    • @coderabbitai read src/utils.ts and generate unit testing code.
    • @coderabbitai read the files in the src/scheduler package and generate a class diagram using mermaid and a README in the markdown format.
    • @coderabbitai help me debug CodeRabbit configuration file.

Note: Be mindful of the bot's finite context window. It's strongly recommended to break down tasks such as reading entire modules into smaller chunks. For a focused discussion, use review comments to chat about specific files and their changes, instead of using the PR comments.

CodeRabbit Commands (Invoked using PR comments)

  • @coderabbitai pause to pause the reviews on a PR.
  • @coderabbitai resume to resume the paused reviews.
  • @coderabbitai review to trigger an incremental review. This is useful when automatic reviews are disabled for the repository.
  • @coderabbitai full review to do a full review from scratch and review all the files again.
  • @coderabbitai summary to regenerate the summary of the PR.
  • @coderabbitai resolve resolve all the CodeRabbit review comments.
  • @coderabbitai configuration to show the current CodeRabbit configuration for the repository.
  • @coderabbitai help to get help.

Other keywords and placeholders

  • Add @coderabbitai ignore anywhere in the PR description to prevent this PR from being reviewed.
  • Add @coderabbitai summary to generate the high-level summary at a specific location in the PR description.
  • Add @coderabbitai anywhere in the PR title to generate the title automatically.

CodeRabbit Configuration File (.coderabbit.yaml)

  • You can programmatically configure CodeRabbit by adding a .coderabbit.yaml file to the root of your repository.
  • Please see the configuration documentation for more information.
  • If your editor has YAML language server enabled, you can add the path at the top of this file to enable auto-completion and validation: # yaml-language-server: $schema=https://coderabbit.ai/integrations/schema.v2.json

Documentation and Community

  • Visit our Documentation for detailed information on how to use CodeRabbit.
  • Join our Discord Community to get help, request features, and share feedback.
  • Follow us on X/Twitter for updates and announcements.

@mencian mencian merged commit 0b7003e into master Oct 18, 2024
7 checks passed
@mencian mencian deleted the bump/neat branch October 18, 2024 21:02
This was referenced Oct 19, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
autobump Automatic Version Update new version
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants