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Update panacus to 0.2.5 #51603

Merged
merged 1 commit into from
Oct 23, 2024
Merged

Update panacus to 0.2.5 #51603

merged 1 commit into from
Oct 23, 2024

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Update panacus: 0.2.40.2.5

install with bioconda Conda

Info Link or Description
Recipe recipes/panacus (click to view/edit other files)
Summary panacus is a tool for computing counting statistics for GFA files.
Home https://github.com/marschall-lab/panacus
Releases https://github.com/marschall-lab/panacus/tags
Recipe Maintainer(s) @danydoerr, @heringerp
Author @marschall-lab

This pull request was automatically generated (see docs).

@BiocondaBot BiocondaBot added autobump Automatic Version Update new version labels Oct 23, 2024
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coderabbitai bot commented Oct 23, 2024

📝 Walkthrough

Walkthrough

This pull request introduces changes to the meta.yaml file for the panacus package. The version number has been updated from 0.2.4 to 0.2.5, indicating a new release of the package. In conjunction with the version update, the SHA256 checksum for the source tarball has been modified to 7b4e4aee52528c569ad663d0fcd00bd42f221f29f93f0768f18c2ac2d3f0d769, replacing the previous checksum of e4709c5e3e4b5c445789406a0ebf06a2052e24bc5fcc3b540cacf8064c2ab478. Additionally, the build number has been reset from 2 to 0. The changes are limited to these updates, with no alterations to the logic, error handling, or control flow present in the file.

Possibly related PRs

  • Update panacus version #50987: This PR updates the meta.yaml file for the panacus package, changing the version number and SHA256 checksum, similar to the changes in the main PR which also involves updating the version and checksum in the same file.
  • Update panacus recipe to add cmake and c++ dependency #50982: This PR modifies the meta.yaml file for the panacus package by adding build requirements, which may relate to the overall management of the package's metadata, although it does not directly change the version or checksum.
  • Update centrifuge to 1.0.4.2 #51507: This PR updates the centrifuge package's meta.yaml file, changing the version and resetting the build number, similar to the changes made in the main PR regarding version and build number adjustments.

📜 Recent review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between 9b88759 and da9c874.

📒 Files selected for processing (1)
  • recipes/panacus/meta.yaml (1 hunks)
🧰 Additional context used
🔇 Additional comments (4)
recipes/panacus/meta.yaml (4)

2-2: LGTM: Version update is correct.

Version bump to 0.2.5 matches the PR objectives.


13-13: LGTM: Build number correctly reset.

Build number reset to 0 follows the standard convention when updating package version.


Line range hint 18-31: Verify dependencies and platform compatibility.

Let's ensure:

  1. Dependencies are still compatible with version 0.2.5
  2. The package still builds on the additional platforms (osx-arm64, linux-aarch64)
#!/bin/bash
# Description: Check for any dependency changes in the new version
# Look for setup.py, cargo.toml, or other dependency files in the source

VERSION="0.2.5"
URL="https://github.com/marschall-lab/panacus/archive/refs/tags/${VERSION}.tar.gz"

# Download and extract source
curl -L "$URL" | tar xz

# Check for dependency files
fd -t f "setup.py|Cargo.toml|requirements.txt" "panacus-${VERSION}"

Also applies to: 47-49

🧰 Tools
🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)


10-10: Verify SHA256 checksum against the source tarball.

Let's verify the checksum matches the source tarball from the upstream repository.


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@martin-g martin-g merged commit bd8b0d6 into master Oct 23, 2024
7 checks passed
@martin-g martin-g deleted the bump/panacus branch October 23, 2024 15:56
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