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Update InstaNovo: Use GPU version of Pytorch #52231

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Update InstaNovo: Use GPU version of Pytorch #52231

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39a94da
Use GPU version of Pytorch
BioGeek Nov 20, 2024
751b605
Shorter summary line
BioGeek Nov 20, 2024
1e89f44
Add CUDA dependencies to instanovo recipe
BioGeek Nov 20, 2024
d50776d
Fix linter issue
BioGeek Nov 20, 2024
cb09c4a
torch.cuda.is_available() check will fail in CI
BioGeek Nov 20, 2024
ec00144
remove cudatoolkit from instanovo recipe
BioGeek Nov 20, 2024
b18a9c9
Merge branch 'bioconda:master' into instanovo_gpu
BioGeek Nov 20, 2024
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9 changes: 6 additions & 3 deletions recipes/instanovo/meta.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@ source:
build:
noarch: python
script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
number: 0
number: 1
run_exports:
- {{ pin_subpackage(name | lower, max_pin="x.x") }}

Expand Down Expand Up @@ -41,14 +41,17 @@ requirements:
- scikit-learn
- spectrum_utils
- tensorboard
- pytorch
- pytorch-gpu
- cudatoolkit
- cuda-nvcc
- tqdm

test:
imports:
- instanovo
commands:
- python -c "import instanovo; print(instanovo.__version__)"
- python -c "import torch; print(f'CUDA is available: {torch.cuda.is_available()}')"
requires:
- pip

Expand All @@ -62,4 +65,4 @@ extra:
recipe-maintainers:
- BioGeek
identifiers:
- doi:10.1101/2023.08.30.555055
- doi:10.1101/2023.08.30.555055
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