merge bulk into master #9040
Merged
merge bulk into master #9040
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Member
bgruening
commented
May 25, 2018
•
bgruening
commented
- I have read the guidelines for bioconda recipes.
- This PR adds a new recipe.
- AFAIK, this recipe is directly relevant to the biological sciences (otherwise, please submit to the more general purpose conda-forge channel).
- This PR updates an existing recipe.
- This PR does something else (explain below).
* update limma (#8616) * bumping groot to v0.7 (#8618) * New: GATK4 vqsr_cnn python module (#8617) Provides neural network based filtering for GATK4 variant calling https://gatkforums.broadinstitute.org/gatk/discussion/10996/deep-learning-in-gatk4 * Add EMA (#8612) * ema * Update ema * Update ema * Update ema * Add py{{ CONDA_PY }} to build string (#8611) * bump CONDA_GSL to 2.4 * use mktemp by default in bootstrap.py (#8625) * fix doi * use mktemp on osx * always use mktemp * Added new perl-extutils-cbuilder recipe (#8619) * Bump quasitools version to 0.3.1 (#8627) * Add recipe for fqtrim (#8629) * Add recipe for fqtrim 0.9.7 * Add variables * auto bump build numbers * attempt lint fix? * add missing hash for gfold * reverty fwdpy11 meta * add openblas to all packages that didn't already include it * bump packages except bioconductor-rmat and pymix. the latter fails lint tests, but CI doesn't give a reason * conda-forge seems to pin at 2.2, so I guess we should, too? * freaky magic courtesy of @johanneskoester * roll eqtlbma back to gsl 1.16 * pinning to 1.16 fails bioconda lint checks * add eigensoft and ea-utils to blacklist * attempt to build eqtlbma with GSL 1.16 * add linting exception
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