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Bulk java noarch #9086

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May 31, 2018
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2 changes: 1 addition & 1 deletion recipes/adam/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@ package:

build:
number: 0
skip: False
noarch: generic

source:
fn: adam-distribution-spark2_2.11-{{ version }}-bin.tar.gz
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2 changes: 1 addition & 1 deletion recipes/adapterremovalfixprefix/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@ source:
sha256: d25a47661ba878d38ddfb227ee34c1b77b9a15c802287524c2753b8edd487fff

build:
noarch: python
noarch: generic
number: 0

requirements:
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3 changes: 2 additions & 1 deletion recipes/asciigenome/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,8 @@ source:

build:
number: 0

noarch: generic
s
requirements:
run:
- openjdk
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2 changes: 1 addition & 1 deletion recipes/astalavista/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@ source:

build:
number: 0
skip: False
noarch: generic

requirements:
run:
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1 change: 1 addition & 0 deletions recipes/bbmap/37.10/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -9,6 +9,7 @@ about:

build:
number: 0
noarch: generic

package:
name: {{ name|lower }}
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1 change: 1 addition & 0 deletions recipes/bbmap/37.17/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -9,6 +9,7 @@ about:

build:
number: 0
noarch: generic

package:
name: {{ name|lower }}
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1 change: 1 addition & 0 deletions recipes/bbmap/37.52/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -9,6 +9,7 @@ about:

build:
number: 0
noarch: generic

package:
name: {{ name|lower }}
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1 change: 1 addition & 0 deletions recipes/bbmap/37.62/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -9,6 +9,7 @@ about:

build:
number: 0
noarch: generic

package:
name: {{ name|lower }}
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1 change: 1 addition & 0 deletions recipes/bbmap/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -9,6 +9,7 @@ about:

build:
number: 0
noarch: generic

package:
name: {{ name|lower }}
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1 change: 1 addition & 0 deletions recipes/bcbio-prioritize/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -9,6 +9,7 @@ source:

build:
number: 1
noarch: generic

requirements:
run:
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2 changes: 1 addition & 1 deletion recipes/bcbio-variation-recall/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@ source:

build:
number: 0
skip: False
noarch: generic

requirements:
run:
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2 changes: 1 addition & 1 deletion recipes/bcbio-variation/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@ source:

build:
number: 2
skip: False
noarch: generic

requirements:
run:
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2 changes: 1 addition & 1 deletion recipes/beagle/4.0_06Jun17/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@ source:
build:
detect_binary_files_with_prefix: True
number: 1
skip: False
noarch: generic

requirements:
run:
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2 changes: 1 addition & 1 deletion recipes/beagle/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@ source:
build:
detect_binary_files_with_prefix: True
number: 0
skip: False
noarch: generic

requirements:
run:
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2 changes: 1 addition & 1 deletion recipes/biopet-vcfstats/1.0/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@ source:
url: https://github.com/biopet/vcfstats/releases/download/v1.0/VcfStats-assembly-1.0.jar
sha256: 97026fcd375a6ed12ccf0d7f953c45529b42c05934fd5c12aa5ca4d9a4bb11f1
build:
noarch: python
noarch: generic
number: 0
requirements:
run:
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2 changes: 1 addition & 1 deletion recipes/biopet-vcfstats/1.1/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@ source:
url: https://github.com/biopet/vcfstats/releases/download/v1.1/VcfStats-assembly-1.1.jar
sha256: f9ad47d5d840a99271d5f70b30046304330f1a1bf6e99756da5ecd2841da4a32
build:
noarch: python
noarch: generic
number: 0
requirements:
run:
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2 changes: 1 addition & 1 deletion recipes/biopet-vcfstats/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@ source:
url: https://github.com/biopet/vcfstats/releases/download/v1.1/VcfStats-assembly-1.1.jar
sha256: f9ad47d5d840a99271d5f70b30046304330f1a1bf6e99756da5ecd2841da4a32
build:
noarch: python
noarch: generic
number: 0
requirements:
run:
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2 changes: 1 addition & 1 deletion recipes/biopet/0.8.0/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@ source:
url: https://github.com/biopet/biopet/releases/download/v0.8.0/Biopet-0.8.0-26269612.jar
sha256: 95e93cef4232e1bc4623b30b580c66f4bb76c58278e22815e78aee1095ee2f2b
build:
noarch: python
noarch: generic
number: 0
requirements:
host:
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2 changes: 1 addition & 1 deletion recipes/biopet/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@ source:
url: https://github.com/biopet/biopet/releases/download/v0.9.0/Biopet-0.9.0-be7838f2.jar
sha256: 50fb9ffec164b85bebb6e8d127e0ebf70ad608855011fd4b55276bcbb1970259
build:
noarch: python
noarch: generic
number: 0
requirements:
host:
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1 change: 1 addition & 0 deletions recipes/bpipe/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -17,6 +17,7 @@ source:

build:
number: 0
noarch: generic

requirements:
run:
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1 change: 1 addition & 0 deletions recipes/break-point-inspector/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -12,6 +12,7 @@ source:

build:
number: 0
noarch: generic

requirements:
run:
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2 changes: 1 addition & 1 deletion recipes/cannoli/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@ package:

build:
number: 0
skip: False
noarch: generic

source:
fn: cannoli-distribution-spark2_2.11-{{ version }}-bin.tar.gz
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2 changes: 1 addition & 1 deletion recipes/cgview/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,7 @@ package:
version: {{ version }}

build:
noarch: python
noarch: generic
number: 1

source:
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1 change: 1 addition & 0 deletions recipes/chromhmm/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -4,6 +4,7 @@ package:

build:
number: 0
noarch: generic

source:
fn: ChromHMM.zip
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2 changes: 1 addition & 1 deletion recipes/circularmapper/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@ source:
sha256: 2018537eff3cb0fcb531d36dd453d5d445fe13b64bcdd376d634e7857bf1ed0b

build:
noarch: python
noarch: generic
number: 0

requirements:
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2 changes: 1 addition & 1 deletion recipes/clipandmerge/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@ source:
md5: 548e403bf12d9709949fd74236205a01

build:
noarch: python
noarch: generic
number: 0

requirements:
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2 changes: 1 addition & 1 deletion recipes/clove/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@ package:
version: {{ version }}

build:
noarch: python
noarch: generic
number: 0

source:
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1 change: 1 addition & 0 deletions recipes/consensusfixer/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -14,6 +14,7 @@ package:

build:
number: 0
noarch: generic

source:
url: https://github.com/cbg-ethz/{{ name }}/releases/download/{{ version }}/{{ name }}.jar
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2 changes: 1 addition & 1 deletion recipes/cramtools/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@ source:

build:
number: 1
skip: False
noarch: generic

requirements:
run:
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2 changes: 1 addition & 1 deletion recipes/crisper_recognition_tool/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@ package:
version: {{ version }}

build:
noarch: python
noarch: generic
number: 0

source:
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1 change: 1 addition & 0 deletions recipes/curlywhirly/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -12,6 +12,7 @@ source:

build:
number: 0
noarch: generic

requirements:
build:
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2 changes: 1 addition & 1 deletion recipes/damageprofiler/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@ source:
md5: ef5d26e6d2de9dda5c355a94bd68d942

build:
noarch: python
noarch: generic
number: 0

requirements:
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2 changes: 1 addition & 1 deletion recipes/dedup/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@ source:
md5: c4993f32f09dfe618cdbffef3c92a564

build:
noarch: python
noarch: generic
number: 0

requirements:
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2 changes: 1 addition & 1 deletion recipes/dia_umpire/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@ package:
version: {{ version }}

build:
noarch: python
noarch: generic
number: 0

source:
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2 changes: 1 addition & 1 deletion recipes/dsh-bio/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@ package:

build:
number: 0
skip: False
noarch: generic

source:
url: https://search.maven.org/remotecontent?filepath=org/dishevelled/dsh-bio-tools/{{ version }}/dsh-bio-tools-{{ version }}-bin.tar.gz
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2 changes: 1 addition & 1 deletion recipes/effectivet3/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@ package:
version: 1.0.1

build:
noarch: python
noarch: generic
number: 0

source:
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2 changes: 1 addition & 1 deletion recipes/embl-validator/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,7 @@ source:
sha256: {{ sha256hash }}

build:
noarch: python
noarch: generic
number: 0

requirements:
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2 changes: 1 addition & 1 deletion recipes/fastqc/0.11.2/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@ about:
build:
detect_binary_files_with_prefix: true
number: 0
skip: False
noarch: generic

requirements:
run:
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2 changes: 1 addition & 1 deletion recipes/gatk-framework/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@ package:

build:
number: 4
skip: False
noarch: generic

source:
fn: gatk-framework-3.6-24.tar.gz
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2 changes: 1 addition & 1 deletion recipes/gatk/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,7 @@ package:
version: '3.8'

build:
noarch: python
noarch: generic
number: 4
skip: False

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5 changes: 2 additions & 3 deletions recipes/gatk4/4.0.3.0/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@ package:
version: {{ version }}

build:
noarch: python
noarch: generic
number: 0

source:
Expand All @@ -22,8 +22,7 @@ requirements:
host:
run:
- openjdk >=8,<9
# constrain python to prevent multiple builds with conda-build 2.1.x
- python >0
- python

test:
commands:
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5 changes: 2 additions & 3 deletions recipes/gatk4/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@ package:
version: {{ version }}

build:
noarch: python
noarch: generic
number: 0

source:
Expand All @@ -22,8 +22,7 @@ requirements:
host:
run:
- openjdk >=8,<9
# constrain python to prevent multiple builds with conda-build 2.1.x
- python >0
- python

test:
commands:
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1 change: 1 addition & 0 deletions recipes/igv/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -12,6 +12,7 @@ source:

build:
number: 0
noarch: generic

requirements:
run:
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