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Chado tools #9991

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merged 8 commits into from
Aug 1, 2018
Merged

Chado tools #9991

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1f9df25
bioconda recipe for chado-tools
Jul 19, 2018
247c103
use meta.yaml created by skeleton
Jul 19, 2018
2ef6211
set source to github
Jul 19, 2018
fe783f1
remove build script section
Jul 19, 2018
d4e05d6
remove import section
Jul 19, 2018
8d533ab
restore import section
Jul 19, 2018
4c4986b
correction
Jul 19, 2018
49760ce
noarch: python
Jul 20, 2018
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1 change: 1 addition & 0 deletions recipes/chado-tools/build.sh
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python3 setup.py install --single-version-externally-managed --record=record.txt
43 changes: 43 additions & 0 deletions recipes/chado-tools/meta.yaml
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{% set name = "chado-tools" %}
{% set version = "0.0.3" %}
{% set file_ext = "tar.gz" %}
{% set hash_type = "sha256" %}
{% set hash_value = "e8b7407013eee815288589f07314655d1e6ffc7c688f7daf58080fc4369a3668" %}

package:
name: {{ name|lower }}
version: {{ version }}

source:
url: https://github.com/sanger-pathogens/{{ name }}/archive/v{{ version }}.{{ file_ext }}
{{ hash_type }}: {{ hash_value }}

build:
number: 0
noarch: generic
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I guess this can be noarch: python?

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I'm not sure. It's a command line tool, and according to the documentation, it should then be "generic" - if I understood correctly.

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@puethe puethe Jul 20, 2018 •
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Tests on my machine pass flawlessly with either setting (python/generic), but fail if completely omitting "noarch". Let me know what you think is better.

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python is preferred I guess.

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Ok, thanks. Changed it.

entry_points:
- chado = scripts.chado_tools:main

requirements:
host:
- python >=3.6
- setuptools
- psycopg2
- pyyaml
run:
- python >=3.6
- psycopg2
- pyyaml

test:
imports:
- scripts
commands:
- chado --help

about:
home: https://github.com/sanger-pathogens/chado-tools/
license: GNU General Public v3 (GPLv3)
license_family: GPL3
license_file: LICENSE
summary: Tools to access CHADO databases