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ping! #118

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merged 2 commits into from
May 3, 2022
Merged

ping! #118

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18 changes: 9 additions & 9 deletions .github/workflows/main.yml
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
name: redbiom CI

on:
pull_request:
push:
Expand All @@ -14,11 +14,11 @@ jobs:
# based roughly on https://github.com/conda-incubator/setup-miniconda#example-1-basic-usage
# via biocore/empress
python-version: ["3.6", "3.7", "3.8", "3.9"]

steps:
- name: Check out repository code
uses: actions/checkout@v2

- name: Setup for conda
uses: conda-incubator/setup-miniconda@v2
with:
Expand All @@ -30,9 +30,9 @@ jobs:
run: |
conda create --yes -n test-env python=${{ matrix.python-version }} requests pandas click redis h5py nose
conda activate test-env
conda install -c conda-forge --yes scikit-bio
pip install flake8 nltk biom-format msgpack
pip install -e . --no-deps
conda install -c conda-forge --yes scikit-bio biom-format
pip install flake8 nltk msgpack
pip install -e . --no-deps

- name: Webdis install
shell: bash -l {0}
Expand All @@ -47,14 +47,14 @@ jobs:
shell: bash -l {0}
run: |
conda activate test-env

redis-server --daemonize yes

pwd
pushd webdis
./webdis &
popd

alias md5=md5sum
export REDBIOM_HOST=http://127.0.0.1:7379
redbiom summarize contexts # will return a nonzero exit status if it cannot communicate with the default host
Expand Down