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Refactor manual creation of pydantic classes #245

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mengerj opened this issue Dec 12, 2024 · 3 comments · Fixed by #246
Open

Refactor manual creation of pydantic classes #245

mengerj opened this issue Dec 12, 2024 · 3 comments · Fixed by #246

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@mengerj
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mengerj commented Dec 12, 2024

The current manual creation of the pydantic classes results in a different structure as the automatic approach. This script explains how to reformat the manual definition to adhere to the same structure: https://github.com/biocypher/scverse-x-biochatter/blob/main/functions/dict_to_pydanctic_template.py
The method name is here included by passing at to pydantics create_model method.
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mengerj commented Dec 12, 2024 •
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refactored the anndata_agent: #246

@mengerj mengerj linked a pull request Dec 12, 2024 that will close this issue
Refactor manual pydantics #246
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@mengerj mengerj mentioned this issue Dec 12, 2024
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mengerj commented Dec 12, 2024

Refactoring of the scanpy pl agents: #255

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mengerj commented Dec 12, 2024

Still need to refactor scanpy.tl agent

@mengerj mengerj mentioned this issue Dec 13, 2024
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Refactor manual pydantics biocypher/biochatter
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