Skip to content

Issues: biocypher/biochatter

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

90 Open 53 Closed
90 Open 53 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Find a generic way to let a tool using LLM agent know which module a function is from
#258 opened Dec 13, 2024 by mengerj
Conversation class typing in API agent module is confusing
#252 opened Dec 12, 2024 by slobentanzer
Develop benchmarking test cases for Tools tl Module
#251 opened Dec 12, 2024 by bastienchassagnol
1
Develop benchmarking test cases for AnnData IO Operations
#250 opened Dec 12, 2024 by anisdismail
1
Create pydantic classes and mock test for scanpy pp module
#247 opened Dec 12, 2024 by kvitoslava-yarish
Refactor manual creation of pydantic classes
#245 opened Dec 12, 2024 by mengerj
1
3
Refactor query builder to functionalize create_runnable
#243 opened Dec 12, 2024 by vd-dragan21
@vd-dragan21
Cereate API function calling module for scanpy pp
#242 opened Dec 12, 2024 by kvitoslava-yarish
@kvitoslava-yarish
Client.init() got an unexpected keyword argument 'proxies' bug Something isn't working
#240 opened Dec 12, 2024 by stefanches7
1
Instill system prompts in conversation using the conversation init
#237 opened Dec 11, 2024 by slobentanzer
1
use call formatter in all use cases (API calling questions)
#236 opened Dec 11, 2024 by slobentanzer
added support for concatenation operations in anndata
#235 opened Dec 11, 2024 by anisdismail
@anisdismail @noahbruderer
1
Create generic method to generate a pydantic class for each function in a module:
#230 opened Dec 11, 2024 by mengerj
1
2
Create scverse function calling modules
#223 opened Dec 10, 2024 by slobentanzer
Create API function calling module for scanpy tl
#222 opened Dec 10, 2024 by mengerj
2
@bastienchassagnol @vd-dragan21 @mengerj
4
Create API module for calling the scanpy pl module
#221 opened Dec 10, 2024 by slobentanzer
1
@slobentanzer
3
Improve information transmitted to LLM via the BioCypher schema
#216 opened Nov 29, 2024 by slobentanzer
Query generation: add descriptions to enable function calling-like behaviour
#214 opened Nov 14, 2024 by slobentanzer
Relationship generation: allow no directionality
#213 opened Nov 14, 2024 by slobentanzer
KG schemata in benchmark need to be enriched ("schema_info")
#212 opened Nov 14, 2024 by slobentanzer
Benchmark: run on new GPT 4o model, maybe 'o1' as well?
#206 opened Sep 13, 2024 by slobentanzer Improve Benchmarking
Biocypher KG rag prompt construction need query result examples
#204 opened Sep 10, 2024 by winternewt
Ubuntu 24: Python 3.12 leads to package incompatibility
#201 opened Aug 30, 2024 by slobentanzer
API calling: LLMs to parameterise Bioconductor functions using BioChatter API definitions
#191 opened Aug 1, 2024 by slobentanzer Bioconductor support chatbot
Add Bioconductor test cases to the BioChatter benchmark
#190 opened Aug 1, 2024 by slobentanzer Bioconductor support chatbot
ProTip! Updated in the last three days: updated:>2024-12-18.