[FEATURE] New sandbox_path property

bioexcel · Jun 14, 2024 · 04c595a · 04c595a
1 parent 136cf34
commit 04c595a
Show file tree

Hide file tree

Showing 5 changed files with 5 additions and 0 deletions.
diff --git a/biobb_cmip/cmip/cmip_ignore_residues.py b/biobb_cmip/cmip/cmip_ignore_residues.py
@@ -24,6 +24,7 @@ class CmipIgnoreResidues(BiobbObject):
             * **ignore_all** (*bool*) - (False) Mark all the residues in the PDB file.
             * **remove_tmp** (*bool*) - (True) [WF property] Remove temporal files.
             * **restart** (*bool*) - (False) [WF property] Do not execute if output files exist.
+            * **sandbox_path** (*str*) - ("./") [WF property] Parent path to the sandbox directory.
 
 
     Examples:

diff --git a/biobb_cmip/cmip/cmip_prepare_pdb.py b/biobb_cmip/cmip/cmip_prepare_pdb.py
@@ -24,6 +24,7 @@ class CmipPreparePDB(BiobbObject):
             * **fix_backbone_atoms** (*bool*) - (True) Add missing O, OXT backbone atoms.
             * **remove_tmp** (*bool*) - (True) [WF property] Remove temporal files.
             * **restart** (*bool*) - (False) [WF property] Do not execute if output files exist.
+            * **sandbox_path** (*str*) - ("./") [WF property] Parent path to the sandbox directory.
 
 
     Examples:

diff --git a/biobb_cmip/cmip/cmip_prepare_structure.py b/biobb_cmip/cmip/cmip_prepare_structure.py
@@ -32,6 +32,7 @@ class CmipPrepareStructure(BiobbObject):
         properties (dict - Python dictionary object containing the tool parameters, not input/output files):
             * **remove_tmp** (*bool*) - (True) [WF property] Remove temporal files.
             * **restart** (*bool*) - (False) [WF property] Do not execute if output files exist.
+            * **sandbox_path** (*str*) - ("./") [WF property] Parent path to the sandbox directory.
             * **container_path** (*str*) - (None)  Path to the binary executable of your container.
             * **container_image** (*str*) - ("cmip/cmip:latest") Container Image identifier.
             * **container_volume_path** (*str*) - ("/data") Path to an internal directory in the container.

diff --git a/biobb_cmip/cmip/cmip_run.py b/biobb_cmip/cmip/cmip_run.py
@@ -43,6 +43,7 @@ class CmipRun(BiobbObject):
             * **binary_path** (*str*) - ("cmip") Path to the CMIP cmip executable binary.
             * **remove_tmp** (*bool*) - (True) [WF property] Remove temporal files.
             * **restart** (*bool*) - (False) [WF property] Do not execute if output files exist.
+            * **sandbox_path** (*str*) - ("./") [WF property] Parent path to the sandbox directory.
             * **container_path** (*str*) - (None)  Path to the binary executable of your container.
             * **container_image** (*str*) - ("cmip/cmip:latest") Container Image identifier.
             * **container_volume_path** (*str*) - ("/data") Path to an internal directory in the container.

diff --git a/biobb_cmip/cmip/cmip_titration.py b/biobb_cmip/cmip/cmip_titration.py
@@ -34,6 +34,7 @@ class CmipTitration(BiobbObject):
             * **binary_path** (*str*) - ("titration") Path to the CMIP Titration executable binary.
             * **remove_tmp** (*bool*) - (True) [WF property] Remove temporal files.
             * **restart** (*bool*) - (False) [WF property] Do not execute if output files exist.
+            * **sandbox_path** (*str*) - ("./") [WF property] Parent path to the sandbox directory.
             * **container_path** (*str*) - (None)  Path to the binary executable of your container.
             * **container_image** (*str*) - ("cmip/cmip:latest") Container Image identifier.
             * **container_volume_path** (*str*) - ("/data") Path to an internal directory in the container.