make sure sample inputs/outputs are relative paths

bioimage-io · Nov 26, 2021 · 1942df0 · 1942df0
1 parent 2d1e096
commit 1942df0
Showing 1 changed file with 4 additions and 3 deletions.
diff --git a/bioimageio/core/build_spec/build_model.py b/bioimageio/core/build_spec/build_model.py
@@ -649,11 +649,12 @@ def build_model(
  if links is not None:
  links = list(set(links))
 
- # cast sample inputs / outputs to uri
+ # make sure sample inputs / outputs are relative paths
+ # todo: currently this will fail for absolute paths that are not under root. should we copy the samples then?
  if sample_inputs is not None:
- sample_inputs = resolve_local_source(sample_inputs, root)
+ sample_inputs = [p.relative_to(root) for p in resolve_local_source(sample_inputs, root)]
  if sample_outputs is not None:
- sample_outputs = resolve_local_source(sample_outputs, root)
+ sample_outputs = [p.relative_to(root) for p in resolve_local_source(sample_outputs, root)]
 
  # optional kwargs, don't pass them if none
  optional_kwargs = {