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Add deepimagej config generation #151

Merged
merged 19 commits into from
Nov 28, 2021
Merged

Add deepimagej config generation #151

merged 19 commits into from
Nov 28, 2021

Commits on Nov 20, 2021

  1. Add deepimagej config generation WIP

    @constantinpape
    constantinpape committed Nov 20, 2021
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  2. Apply suggestions from code review 

    Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
    @constantinpape @github-actions
    constantinpape and github-actions[bot] authored Nov 20, 2021
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Commits on Nov 25, 2021

  1. Merge branch 'main' into deepimagej-config

    @constantinpape
    constantinpape committed Nov 25, 2021
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  2. Update deepimagej config in build model

    @constantinpape
    constantinpape committed Nov 25, 2021
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  3. Merge branch 'deepimagej-config' of https://github.com/bioimage-io/py… 

    …thon-bioimage-io into deepimagej-config
    @constantinpape
    constantinpape committed Nov 25, 2021
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  4. Add tifffile to dependencies

    @constantinpape
    constantinpape committed Nov 25, 2021
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  5. Apply suggestions from code review 

    Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
    @constantinpape @github-actions
    constantinpape and github-actions[bot] authored Nov 25, 2021
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Commits on Nov 26, 2021

  1. Merge branch 'main' into deepimagej-config

    @constantinpape
    constantinpape committed Nov 26, 2021
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  2. Merge branch 'deepimagej-config' of https://github.com/bioimage-io/py… 

    …thon-bioimage-io into deepimagej-config
    @constantinpape
    constantinpape committed Nov 26, 2021
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  3. Fix test issues

    @constantinpape
    constantinpape committed Nov 26, 2021
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  4. make sure sample inputs/outputs are relative paths

    @FynnBe
    FynnBe committed Nov 26, 2021
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  5. Use binarize macro in deepimagej

    @constantinpape
    constantinpape committed Nov 26, 2021
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  6. add output arg to resolve_source

    @FynnBe
    FynnBe committed Nov 26, 2021
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  7. ensure local paths in root

    @FynnBe
    FynnBe committed Nov 26, 2021
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  8. remove check only available in py3.9

    @FynnBe
    FynnBe committed Nov 26, 2021
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  9. various small fixes

    @FynnBe
    FynnBe committed Nov 26, 2021
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  10. account for relative paths

    @FynnBe
    FynnBe committed Nov 26, 2021
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Commits on Nov 27, 2021

  1. instantiate raw_nodes.Model with root_path 

    needed to resolve relative paths
    @FynnBe
    FynnBe committed Nov 27, 2021
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Commits on Nov 28, 2021

  1. Minor cleanup in build_spec

    @constantinpape
    constantinpape committed Nov 28, 2021
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