V20210921

bioinfo-chru-strasbourg · Sep 21, 2021 · be77327 · be77327
1 parent b704f54
commit be77327
Showing 1 changed file with 2 additions and 11 deletions.
diff --git a/config/config.prioritization.ini b/config/config.prioritization.ini
@@ -341,7 +341,7 @@ snpeff[]="MODIFIER:0:Usually non-coding variants or variants affecting non-codin
 ;;
 ;;;;;;;;;;;;;;;;;;;
 
-; HEMATOLOGY filter
+; SOMATIC filter
 ;;;;;;;;;;;;;;;;;
 description="filter default including SOMATIC cretaria (e.g. Variant Frequency VF)"
 
@@ -616,14 +616,6 @@ ALTDepth[]="<10:f:Low depth/coverage" ; FILTERED if ALTDepth < 10
 ;;;;;;;;;;;
 ; COSMIC[]="ID:20:Described on COSMIC database" ; +10 if variant present in COSMIC (see config.annotation.ini for te release)
 COSMIC[]="ID:10:Described on COSMIC database" ; +20 if variant present in COSMIC (see config.annotation.ini for te release) intestine
-COSMIC[]="lung:p:Described on COSMIC database as related to 'lung'" ; +20 if variant present in COSMIC (see config.annotation.ini for te release)
-COSMIC[]="lung:10:Described on COSMIC database as related to 'lung'" ; +20 if variant present in COSMIC (see config.annotation.ini for te release)
-COSMIC[]="intestin:p:Described on COSMIC database as related to 'intestin'" ; +20 if variant present in COSMIC (see config.annotation.ini for te release) intestine
-COSMIC[]="intestin:10:Described on COSMIC database as related to 'intestin'" ; +20 if variant present in COSMIC (see config.annotation.ini for te release) intestine
-CLINVAR[]="lung:p:Described on CLINVAR database as related to 'Lung'" ; PASS if variant present in CLINVAR associated with BRCA (see config.annotation.ini for te release)
-CLINVAR[]="lung:+10:Described on CLINVAR database as related to 'Lung'" ; +10 if variant present in CLINVAR (see config.annotation.ini for te release)
-CLINVAR[]="intestin:p:Described on CLINVAR database as related to 'Intestin'" ; PASS if variant present in CLINVAR associated with BRCA (see config.annotation.ini for te release)
-CLINVAR[]="intestin:+10:Described on CLINVAR database as related to 'Intestin'" ; +10 if variant present in CLINVAR (see config.annotation.ini for te release)
 
 
 ; CLINVAR
@@ -778,7 +770,7 @@ snpeff[]="MODIFIER:0:Usually non-coding variants or variants affecting non-codin
 ;;
 ;;;;;;;;;;;;;;;;;;;
 
-; GERMLINE filter
+; VaRank filter
 description="VaRank filter by default"
 group="UNKNOWN"
 project="UNKNOWN"
@@ -816,4 +808,3 @@ INTERVAR[]="Likely_pathogenic:110:Described as Likely pathogenic in INTERVAR dat
 
 
 
-