Marker genes: Pre-commit reformatting

orangecontrib/bioinformatics/tests/widgets/test_OWMarkerGenes.py

@@ -306,7 +306,8 @@ def test_available_sources(self):
  When more available unittest will be changed.
  """
  self.assertListEqual(
- ["CellMarker", "DictyBase", "Panglao"], list(self.widget.available_sources.keys())
+ ["CellMarker", "DictyBase", "Panglao"],
+ list(self.widget.available_sources.keys()),
  )
 
  def test_source_changed(self):

orangecontrib/bioinformatics/widgets/OWMarkerGenes.py

@@ -1,4 +1,5 @@
 """ OWMarkerGenes """
+
 from typing import List, Tuple, Iterable, Optional
 from functools import partial
 
@@ -44,7 +45,11 @@
 GROUP_BY_ITEMS = ["Cell Type", "Function", "Milestones", "Regulon cluster"]
 FILTER_COLUMNS_DEFAULT = ["Name", "Entrez ID"]
 NUM_LINES_TEXT = 5
-MAP_GROUP_TO_TAX_ID = {'Human': '9606', 'Mouse': '10090', "Dictyostelium discoideum": '44689'}
+MAP_GROUP_TO_TAX_ID = {
+ 'Human': '9606',
+ 'Mouse': '10090',
+ "Dictyostelium discoideum": '44689',
+}
 
 
 class TreeItem(object):
@@ -854,7 +859,7 @@ class Outputs:
  selected_genes = settings.ContextSetting([])
 
  settings_version = 2
- 
+
  available_groups = GROUP_BY_ITEMS
  _available_groups = None
 
@@ -1021,12 +1026,16 @@ def data(self, value: Table):
  self.organism_index = min(
  max(self.organism_index, 0), len(group_values) - 1
  )
-
- self.available_groups = [item for item in GROUP_BY_ITEMS if any(meta.name == item for meta in domain.metas)]
-
+
+ self.available_groups = [
+ item
+ for item in GROUP_BY_ITEMS
+ if any(meta.name == item for meta in domain.metas)
+ ]
+
  self.group_by_cb.clear()
  self.group_by_cb.addItems(self.available_groups)
- self.group_by_cb.setCurrentIndex(self.selected_root_attribute) 
+ self.group_by_cb.setCurrentIndex(self.selected_root_attribute)
 
  self._set_group_index(self.organism_index)
 
@@ -1079,7 +1088,10 @@ def _setup(self) -> None:
  data_not_selected, data_selected = self._filter_data_group(self.data)
 
  if self._available_groups:
- if self._available_groups[self._selected_root_attribute] not in self.available_groups:
+ if (
+ self._available_groups[self._selected_root_attribute]
+ not in self.available_groups
+ ):
  self.selected_root_attribute = 0
 
  # add model to available markers view