update linkml to comply with dependency check

biolink · Dec 13, 2023 · 1acd394 · 1acd394
1 parent f4f557d
commit 1acd394
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Showing 3 changed files with 6 additions and 5 deletions.
diff --git a/.github/workflows/pr-verify-pull-request.yaml b/.github/workflows/pr-verify-pull-request.yaml
@@ -41,6 +41,7 @@ jobs:
           poetry run codespell
           poetry run yamllint -c .yamllint-config biolink-model.yaml
           poetry run yamllint -c .yamllint-config infores_catalog.yaml
+          make validate_infores
 
 
 

diff --git a/Makefile b/Makefile
@@ -130,8 +130,8 @@ gen-project: $(PYMODEL)
 		-d $(DEST) $(SOURCE_SCHEMA_PATH) && mv $(DEST)/*.py $(PYMODEL)
 	mv $(DEST)/prefixmap/biolink_model.yaml $(DEST)/prefixmap/biolink_model_prefix_map.json
 	mv $(PYMODEL)/biolink*.py $(PYMODEL)/model.py
-	$(RUN) gen-pydantic --pydantic_version 1 src/biolink_model/schema/biolink_model.yaml > $(PYMODEL)/pydanticmodel.py
-	$(RUN) gen-pydantic --pydantic_version 2 src/biolink_model/schema/biolink_model.yaml > $(PYMODEL)/pydanticmodel_v2.py
+	$(RUN) gen-pydantic --pydantic-version 1 src/biolink_model/schema/biolink_model.yaml > $(PYMODEL)/pydanticmodel.py
+	$(RUN) gen-pydantic --pydantic-version 2 src/biolink_model/schema/biolink_model.yaml > $(PYMODEL)/pydanticmodel_v2.py
 	cp biolink-model.yaml src/biolink_model/schema/biolink_model.yaml
 	$(MAKE) id-prefixes infores
 

diff --git a/poetry.lock b/poetry.lock