Merge pull request #1490 from biolink/update_main_yaml

revert semmed mappings for associated_with and administrated_to in root level yaml file

ChangeLog

@@ -1,5 +1,10 @@
 CHANGES
 =======
+4.2.1
+-----
+* administered_to, associated_with moved back to related_to in top level yaml
+
+
 4.2.0
 -----
 * infores catalog has now moved to its own repository.

biolink-model.yaml

@@ -6,7 +6,7 @@ license: https://creativecommons.org/publicdomain/zero/1.0/
 
 # Version should be kept in sync with primary Git repository release tag
 
-version: 4.2.0
+version: 4.2.1
 
 ## ------------
 ##
@@ -1727,6 +1727,8 @@ slots:
       - SEMMEDDB:compared_with
       - SEMMEDDB:higher_than
       - SEMMEDDB:lower_than
+      - SEMMEDDB:ADMINISTERED_TO
+      - SEMMEDDB:ASSOCIATED_WITH
       - BFO:0000054
       - UBERON_CORE:protects
       - GOREL:0002005
@@ -1869,8 +1871,6 @@ slots:
     narrow_mappings:
       - RO:0004029
       - SNOMEDCT:47429007
-    broad_mappings:
-      - SEMMEDDB:ASSOCIATED_WITH
 
   superclass of:
     is_a: related to at concept level
@@ -3660,8 +3660,6 @@ slots:
       canonical_predicate: true
     in_subset:
       - translator_minimal
-    broad_mappings:
-      - SEMMEDDB:ADMINISTERED_TO
    # TODO: need an inverse for taken to treat
 
   treatment applications from:

class_prefixes.yaml

@@ -5,7 +5,7 @@ license: https://creativecommons.org/publicdomain/zero/1.0/
 
 # Version should be kept in sync with primary Git repository release tag
 
-version: 4.2.0
+version: 4.2.1
 
 default_prefix: biolink
 default_range: string

project/jsonld/biolink_model.context.jsonld

@@ -1,7 +1,7 @@
 {
    "comments": {
       "description": "Auto generated by LinkML jsonld context generator",
-      "generation_date": "2024-04-12T22:30:42",
+      "generation_date": "2024-04-15T20:19:48",
       "source": "biolink_model.yaml"
    },
    "@context": {

project/jsonld/biolink_model.jsonld

@@ -2,7 +2,7 @@
   "name": "Biolink-Model",
   "description": "Entity and association taxonomy and datamodel for life-sciences data",
   "id": "https://w3id.org/biolink/biolink-model",
-  "version": "4.2.0",
+  "version": "4.2.1",
   "imports": [
     "linkml:types"
   ],
@@ -4686,6 +4686,8 @@
         "https://skr3.nlm.nih.gov/SemMedDBcompared_with",
         "https://skr3.nlm.nih.gov/SemMedDBhigher_than",
         "https://skr3.nlm.nih.gov/SemMedDBlower_than",
+        "https://skr3.nlm.nih.gov/SemMedDBADMINISTERED_TO",
+        "https://skr3.nlm.nih.gov/SemMedDBASSOCIATED_WITH",
         "http://purl.obolibrary.org/obo/BFO_0000054",
         "http://purl.obolibrary.org/obo/uberon/core#protects",
         "http://purl.obolibrary.org/obo/GOREL_0002005",
@@ -4861,9 +4863,6 @@
         "http://purl.obolibrary.org/obo/RO_0004029",
         "http://snomed.info/id/47429007"
       ],
-      "broad_mappings": [
-        "https://skr3.nlm.nih.gov/SemMedDBASSOCIATED_WITH"
-      ],
       "is_a": "related_to_at_instance_level",
       "domain": "NamedThing",
       "slot_uri": "https://w3id.org/biolink/vocab/associated_with",
@@ -8092,9 +8091,6 @@
         "used to treat",
         "given to treat"
       ],
-      "broad_mappings": [
-        "https://skr3.nlm.nih.gov/SemMedDBADMINISTERED_TO"
-      ],
       "is_a": "related_to_at_instance_level",
       "mixins": [
         "treats_or_applied_or_studied_to_treat"
@@ -34828,9 +34824,9 @@
   ],
   "metamodel_version": "1.7.0",
   "source_file": "biolink_model.yaml",
-  "source_file_date": "2024-04-12T22:30:39",
-  "source_file_size": 392125,
-  "generation_date": "2024-04-12T22:30:44",
+  "source_file_date": "2024-04-15T20:19:45",
+  "source_file_size": 392085,
+  "generation_date": "2024-04-15T20:19:50",
   "@type": "SchemaDefinition",
   "@context": [
     "project/jsonld/biolink_model.context.jsonld",

project/jsonschema/biolink_model.schema.json

@@ -33243,5 +33243,5 @@
     "metamodel_version": "1.7.0",
     "title": "Biolink-Model",
     "type": "object",
-    "version": "4.2.0"
+    "version": "4.2.1"
 }