update linkml, linkml-runtime, bmt, tests to take advantage of newer biolink model #1

	---
	name: Check Dependencies in Pyproject.toml

	# Controls when the action will run.
	on:
	pull_request:
	types: [opened, synchronize, reopened]

	# Allows you to run this workflow manually from the Actions tab
	workflow_dispatch:
	types: trigger-run-check-dependencies

	# A workflow run is made up of one or more jobs that can run sequentially or in parallel
	jobs:
	# This workflow contains a single job called "build"
	build:
	# The type of runner that the job will run on
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python: [ "3.9", "3.10" ]

	# Steps represent a sequence of tasks that will be executed as part of the job
	steps:
	# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
	- uses: actions/checkout@v2

	- uses: actions/setup-python@v2
	name: setup python environment
	with:
	python-version: ${{ matrix.python }}

	# this step we remove and rebuild the poetry.lock file to ensure that the tests that follow can be run
	# with the latest dependencies
	- name: Install dependencies
	run: \|
	pip install --upgrade pip
	pip install poetry
	rm -rf poetry.lock
	poetry install

	- name: Run tests
	run: \|
	poetry run make test

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