INSTALL:
python setup.py install
MANUAL: the input file(s) should be clinical files downloaded from TCGA by Firehose
to generate the overall survival data
python INSTALL_PATH/extract_survival_table_obj_v0.0.py -i BRCA.clin.merged.txt
to generate the disease free survival data
python INSTALL_PATH/extract_DiseaseFreesurvival_table_obj_v0.0.py -i -i BRCA.clin.merged.txt
for example the default INSTALL_PATH for linux is /usr/local/lib/pythonX.X/dist-packages/