fix semmed jq string

biothings · Aug 28, 2024 · ddef235 · ddef235
1 parent cf91e51
commit ddef235
Showing 1 changed file with 8 additions and 9 deletions.
diff --git a/data/jq/wrap/semmed.jq b/data/jq/wrap/semmed.jq
@@ -6,7 +6,6 @@ def index_text(main; sub): (main|index(sub)|tostring)+"|"+((main|index(sub)) + (
 .["edge-attributes"] = [.predication | group_by(.pmid) | .[] | .[0] |
 # create edge attributes for each publication
 {
-  "attribute_source": "infores:text-mining-provider-targeted",
   "attribute_type_id": "biolink:has_supporting_study_result",
   "attributes": [
     {
@@ -16,15 +15,15 @@ def index_text(main; sub): (main|index(sub)|tostring)+"|"+((main|index(sub)) + (
     {
       "attribute_type_id": "biolink:publications",
       "value": ( "PMID:"+(.pmid|tostring) ),
+    },
+    {
+      "attribute_type_id": "biolink:subject_location_in_text",
+      "value": ( .subject_text as $text | index_text(.sentence; $text) ),
+    },
+    {
+      "attribute_type_id": "biolink:object_location_in_text",
+      "value": ( .object_text as $text | index_text(.sentence; $text) ),
     }
-      {
-        "attribute_type_id": "biolink:subject_location_in_text",
-        "value": ( .subject_text as $text | index_text(.sentence; $text) ),
-      },
-      {
-        "attribute_type_id": "biolink:object_location_in_text",
-        "value": ( .object_text as $text | index_text(.sentence; $text) ),
-      }
   ],
   "value": ( .predication_id | tostring ),
 }]