hera-v1.2

• Remove fusion detection for developing.
• Change index structure. Index file must be re-build for this version.
• Improve speed (50%) and accuracy.
• Fix some bugs and usage arguments.

hera-v1.1.1

• Add feature: process multiple files
• Improve speed
• Fix some small bugs

Hermes

Following version 1.0, we are now releasing Hera version 1.1 (code name: Hermes) that improves 30% of . running time performance:

• SIMD Smith-Waterman alignment
• Some technical improvements in the EM implementations

We would like to thank the community for bug reports. In this 1.1 release, we have fixed all of your reported bugs in Hera 1.0.

hera-v1.0.1

• Add an option for adding result file prefix
• Fixed build errors on Centos/Mac

hera-v1.0

hera version 1.0 supports:

• Read alignment (kmer hash + Needleman–Wunsch algorithm)
• Transcript abundance estimation
• Gene fusion detection