BS-Seq workflow

1. Clone the repository

git clone https://github.com/bioxfu/BS-Seq

2. Initiate the project

source init.sh

3. Download SRA data

bash download_sra.sh

4. Create config.yaml and Snakefile based on the examples

5. Dry run the workflow to check any mistakes

./dry_run.sh

6. Start the workflow

./run.sh

7. Check the workflow progress in nohup.out

8. Remove the temporary files

./clean.sh

install HOMER tair10 annotation

perl /home/xfu/miniconda2/envs/gmatic/share/homer-4.9.1-5/configureHomer.pl -install tair10