-
Notifications
You must be signed in to change notification settings - Fork 80
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
* Update Dockerfile * new script * bump req. versions
- Loading branch information
Showing
7 changed files
with
128 additions
and
93 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,110 @@ | ||
| #!/bin/bash | ||
| show_help() { | ||
| echo "Usage:" | ||
| echo "$(basename $0) host-notebook --port 8888 --listen 127.0.0.1" | ||
| echo "$(basename $0) run-tests" | ||
| } | ||
| set -euxo pipefail | ||
|
|
||
| HOST_NOTEBOOK=0 | ||
| RUN_TESTS=0 | ||
| PORT=8000 | ||
| while [ $# -gt 0 ]; do | ||
| case "$1" in | ||
| host-notebook) | ||
| HOST_NOTEBOOK=1 | ||
| shift | ||
| ;; | ||
| --port) | ||
| shift | ||
| PORT=$1 | ||
| shift | ||
| ;; | ||
| --listen) | ||
| shift | ||
| LISTEN=$1 | ||
| shift | ||
| ;; | ||
| run-tests) | ||
| RUN_TESTS=1 | ||
| shift | ||
| ;; | ||
| --help|-h) | ||
| show_help | ||
| exit 0 | ||
| ;; | ||
| --) | ||
| break; | ||
| ;; | ||
| *) | ||
| show_help | ||
| exit 1 | ||
| ;; | ||
| esac | ||
| done | ||
|
|
||
| if ! which podrun >/dev/null; then | ||
| SOME_TEMP_DIR=$(mktemp -d) | ||
| trap 'rm -rf -- "$SOME_TEMP_DIR"' EXIT | ||
| ( cd "$SOME_TEMP_DIR"; curl -LOs https://raw.githubusercontent.com/bjodah/dotfiles/master/per-leaf-dir/bin/podrun; chmod +x podrun ) | ||
| export PATH="$SOME_TEMP_DIR:$PATH" | ||
| fi | ||
|
|
||
| SCRIPTS_DIR=$(dirname $(realpath "$BASH_SOURCE")) | ||
| REPO_DIR=$(realpath "$SCRIPTS_DIR/..") | ||
| ENV_DIR="$REPO_DIR/.env" | ||
| PKG_NAME=${PKG_NAME:-$(basename $REPO_DIR)} | ||
|
|
||
| mkdir -p $ENV_DIR | ||
|
|
||
| cat <<EOF>$ENV_DIR/setup.sh | ||
| if [ ! -d .env/ ]; then | ||
| >&2 echo "No .env directory?" | ||
| exit 1 | ||
| fi | ||
| if [ ! -d .env/venv ]; then | ||
| python3 -m venv .env/venv | ||
| fi | ||
| source .env/venv/bin/activate | ||
| if ! python -c "import pycvodes" 2>&1 >/dev/null; then | ||
| python -m pip install --upgrade-strategy=eager --upgrade pip && \ | ||
| python -m pip install --upgrade-strategy=eager numpy 'cython>=3.0.10' setuptools && \ | ||
| env \ | ||
| PYCVODES_NO_LAPACK=1 \ | ||
| PYCVODES_NO_KLU=1 \ | ||
| LDFLAGS='-Wl,--disable-new-dtags -Wl,-rpath,/usr/local/lib -L/usr/local/lib' \ | ||
| python -m pip install --cache-dir .env/pypi-cache -e .[all] | ||
| fi | ||
| if ! python -c "import pyodesys" 2>&1 >/dev/null; then | ||
| python -m pip install --cache-dir .env/pypi-cache -e .[all] | ||
| #jupyter-nbextension enable --user --py widgetsnbextension | ||
| fi | ||
| export MPLBACKEND=Agg | ||
| EOF | ||
| cat <<EOF>$ENV_DIR/run-tests.sh | ||
| #!/bin/bash | ||
| set -e | ||
| source .env/setup.sh | ||
| pytest -sv -ra --pyargs $PKG_NAME | ||
| EOF | ||
| cat <<EOF>$ENV_DIR/host-notebook.sh | ||
| #!/bin/bash | ||
| set -e | ||
| source .env/setup.sh | ||
| jupyter notebook --no-browser --port $PORT --ip=* index.ipynb | ||
| EOF | ||
| if [ $RUN_TESTS = 1 ]; then | ||
| podrun --cont-img-dir $SCRIPTS_DIR/environment \ | ||
| --name "${PKG_NAME}_run_tests" \ | ||
| -- bash $ENV_DIR/run-tests.sh | ||
| fi | ||
| if [ $HOST_NOTEBOOK = 1 ]; then | ||
| podrun --cont-img-dir $SCRIPTS_DIR/environment \ | ||
| --name "${PKG_NAME}_host_notebook_${PORT}" \ | ||
| -p $LISTEN:$PORT:$PORT \ | ||
| -- bash $ENV_DIR/host-notebook.sh | ||
| fi |
This file was deleted.
Oops, something went wrong.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters