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Description
Hi,
I was running the command line to add hits into my blobtoolkit file (command just below) when I receive a python error.
Could you help me identify the error?
I installed the blobtoolkit with conda.
blobtools add --hits blastn.out
--hits diamond.blastx.out
--taxrule bestsumorder
--taxdump ./taxdump/ ./btk
Loading parsed taxdump
Traceback (most recent call last):
File "/home/unamur/URBE/jody/miniconda3/envs/envbtk/bin/blobtools", line 8, in
sys.exit(cli())
File "/home/unamur/URBE/jody/miniconda3/envs/envbtk/lib/python3.9/site-packages/blobtools/blobtools.py", line 105, in cli
sys.exit(subcommand())
File "/home/unamur/URBE/jody/miniconda3/envs/envbtk/lib/python3.9/site-packages/blobtools/lib/add.py", line 203, in cli
main(args)
File "/home/unamur/URBE/jody/miniconda3/envs/envbtk/lib/python3.9/site-packages/blobtools/lib/add.py", line 149, in main
parsed = field["module"].parse(
File "/home/unamur/URBE/jody/miniconda3/envs/envbtk/lib/python3.9/site-packages/blobtools/lib/hits.py", line 525, in parse
bins = bin_hits(
File "/home/unamur/URBE/jody/miniconda3/envs/envbtk/lib/python3.9/site-packages/blobtools/lib/hits.py", line 166, in bin_hits
hits = sorted(blast[identifier], key=get_item)
TypeError: '<' not supported between instances of 'NoneType' and 'int'
Thank you