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Pre‐sketched databases
Jim Shaw edited this page Mar 31, 2024
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3 revisions
Pre-sketched databases for skani are available for download. These databases can be
- searched against in seconds with
skani search
- sketched files can also be used with
skani triangle
andskani dist
if desired
The database is 23 GB compressed and 51 GB uncompressed.
- Default:
-c 125, -m 1000
Download: https://storage.googleapis.com/skani_files/skani-gtdb-r214-sketch-v0.2.tar.gz
wget https://storage.googleapis.com/skani_files/skani-gtdb-r214-sketch-v0.2.tar.gz
tar -zxvf skani-gtdb-r214-sketch-v0.2.tar.gz
skani search my_genome.fa -d skani-gtdb-r214-sketch-v0.2 -o results.tsv