Add "json_merge_patch" dependency (#761)

* Add "json_merge_patch" dependency

* Add jsonpatch to minimal-client, minimal-server deps

Co-authored-by: Hiran Wijesinghe <wwijesing1@bnl.gov>

* Dedupliate and sort.

* Remove comment related to unsorted deps.

---------

Co-authored-by: Dan Allan <daniel.b.allan@gmail.com>
Co-authored-by: Hiran Wijesinghe <wwijesing1@bnl.gov>
Co-authored-by: Dan Allan <dallan@bnl.gov>

pyproject.toml

@@ -48,12 +48,13 @@ all = [
     "aiosqlite",
     "alembic",
     "anyio",
+    "appdirs",
     "asgi-correlation-id",
     "asyncpg",
-    "appdirs",
     "awkward >=2.4.3",
     "blosc2; python_version >= '3.10'",
     "cachetools",
+    "canonicaljson",
     "dask",
     "dask[array]",
     "dask[dataframe]",
@@ -62,12 +63,11 @@ all = [
     "h5netcdf",
     "h5py",
     "httpx >=0.20.0,!=0.23.1",
-    "canonicaljson",
     "jinja2",
     "jmespath",
-    "jsonschema",
-    "jsonpatch",
     "json-merge-patch",
+    "jsonpatch",
+    "jsonschema",
     "lz4",
     "msgpack >=1.0.0",
     "ndindex",
@@ -111,8 +111,9 @@ client = [
     "dask[dataframe]",
     "entrypoints",
     "httpx >=0.20.0,!=0.23.1",
-    "jsonschema",
+    "json-merge-patch",
     "jsonpatch",
+    "jsonschema",
     "lz4",
     "msgpack >=1.0.0",
     "ndindex",
@@ -124,8 +125,8 @@ client = [
     "rich",
     "sparse",
     "typer",
-    "xarray",
     "watchfiles",
+    "xarray",
     "zstandard",
 ]
 # These are used by the client/server to more efficiently compress.
@@ -147,28 +148,27 @@ dev = [
     "coverage",
     "flake8",
     "importlib_resources;python_version < \"3.9\"",
+    "ipython",
     "ldap3",
+    "matplotlib",
+    "mistune <2.0.0",  # temporary while sphinx sorts this out,
+    "myst-parser",
+    "numpydoc",
     "pre-commit",
     "pytest <8",  # TMP pin while plugins catch up
     "pytest-asyncio",
-    "pytest-rerunfailures",
     "pytest-mock",
+    "pytest-rerunfailures",
     "sphinx !=4.1.0, !=4.1.1, !=4.1.2, !=4.2.0",
-    # These are dependencies of various sphinx extensions for documentation.
-    "ipython",
-    "matplotlib",
-    "mistune <2.0.0",  # temporary while sphinx sorts this out,
-    "myst-parser",
-    "numpydoc",
     "sphinx-click",
-    "sphinxcontrib-mermaid",
     "sphinx-copybutton",
     "sphinx_rtd_theme",
+    "sphinxcontrib-mermaid",
 ]
 # These are used by the server to read files in the respective formats.
 formats = [
-    "h5py",
     "h5netcdf",
+    "h5py",
     "openpyxl",
     "pillow",
     "tifffile",
@@ -178,6 +178,8 @@ minimal-client = [
     "appdirs",
     "entrypoints",
     "httpx >=0.20.0,!=0.23.1",
+    "json-merge-patch",
+    "jsonpatch",
     "jsonschema",
     "msgpack >=1.0.0",
     "orjson",
@@ -195,12 +197,14 @@ minimal-server = [
     "appdirs",
     "asgi-correlation-id",
     "cachetools",
+    "canonicaljson",
     "dask",
     "fastapi",
     "httpx >=0.20.0,!=0.23.1",
-    "canonicaljson",
     "jinja2",
     "jmespath",
+    "json-merge-patch",
+    "jsonpatch",
     "jsonschema",
     "msgpack >=1.0.0",
     "orjson",
@@ -230,19 +234,19 @@ server = [
     "awkward >=2.4.3",
     "blosc2; python_version >= '3.10'",
     "cachetools",
+    "canonicaljson",
     "dask",
     "dask[array]",
     "dask[dataframe]",
     "fastapi",
     "h5netcdf",
     "h5py",
     "httpx >=0.20.0,!=0.23.1",
-    "canonicaljson",
     "jinja2",
     "jmespath",
-    "jsonschema",
-    "jsonpatch",
     "json-merge-patch",
+    "jsonpatch",
+    "jsonschema",
     "lz4",
     "msgpack >=1.0.0",
     "ndindex",