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The build_custom_diamond_db action can optionally take a ReferenceDB[NCBITaxonomy] artifact, with which the resulting Diamond database contains taxonomy features. There is a need to create an action that produces this ReferenceDB[NCBITaxonomy] artifact by fetching the appropriate data from the internet.
Something like...
qiime moshpit fetch-ncbi-taxonomy-db ...
Important Considerations
There are two links from where the data comes from. One can find out the time and date of the last modification to the file on the server by calling wget -S --spider <somewhere_in_the_internet>. It might be important to include this data in the artifact since the version might influence the results.
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Context
The
build_custom_diamond_db
action can optionally take aReferenceDB[NCBITaxonomy]
artifact, with which the resulting Diamond database contains taxonomy features. There is a need to create an action that produces thisReferenceDB[NCBITaxonomy]
artifact by fetching the appropriate data from the internet.Something like...
Important Considerations
There are two links from where the data comes from. One can find out the time and date of the last modification to the file on the server by calling
wget -S --spider <somewhere_in_the_internet>
. It might be important to include this data in the artifact since the version might influence the results.Tasks
EggnogSequenceTaxa
forbuild-eggnog-diamond-db
action #108build-eggnog-diamond-db
action #115NCBITaxonomyDirFmt
to accomodate data-version file q2-types-genomics#72The text was updated successfully, but these errors were encountered: