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borenstein-lab

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  1. microbiome-metabolome-curated-data microbiome-metabolome-curated-data Public

    HTML 59 25

  2. burrito burrito Public

    A visualization tool for exploratory data analysis of metagenomic data

    JavaScript 36 9

  3. fishtaco fishtaco Public

    FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of microbiome functional shifts

    Python 23 4

  4. MIMOSA MIMOSA Public

    Model-based Integration of Metabolite Observations and Species Abundances

    R 23 8

  5. MUSiCC MUSiCC Public

    MUSiCC: A marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome

    Python 15 5

  6. CoMiDA CoMiDA Public

    The code and distributable for designing minimal microbial communities with specified metabolic functions.

    C++ 11 3

Repositories

Showing 10 of 24 repositories
  • mimosa2 Public
    borenstein-lab/mimosa2’s past year of commit activity
    R 11 GPL-3.0 6 4 0 Updated Dec 16, 2024
  • microbiome-metabolome-curated-data Public
    borenstein-lab/microbiome-metabolome-curated-data’s past year of commit activity
    HTML 59 MIT 25 1 0 Updated Oct 16, 2024
  • multi_view_integration_analysis Public
    borenstein-lab/multi_view_integration_analysis’s past year of commit activity
    R 11 0 0 0 Updated Jun 6, 2024
  • RDR Public
    borenstein-lab/RDR’s past year of commit activity
    R 1 GPL-3.0 0 0 0 Updated May 5, 2024
  • longitudinal_interpolation Public
    borenstein-lab/longitudinal_interpolation’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Apr 18, 2024
  • IIRN_multi_omic Public

    Multiomic analysis for the paper titled "Integrative analysis of untargeted serum and fecal metabolome and gut microbiome reveals a role in Crohn Disease and with signals that precede a disease flare"

    borenstein-lab/IIRN_multi_omic’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Jan 17, 2024
  • vaginal_microbiome_manifold Public

    Manifold detection

    borenstein-lab/vaginal_microbiome_manifold’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 28, 2023
  • MIMOSA2shiny Public
    borenstein-lab/MIMOSA2shiny’s past year of commit activity
    R 2 GPL-3.0 0 3 0 Updated Dec 19, 2023
  • SOURCE_multiomics Public
    borenstein-lab/SOURCE_multiomics’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Jun 15, 2023
  • drug_microbiome Public

    Data and code for paper "A data-driven approach for predicting the impact of drugs on the human microbiome"

    borenstein-lab/drug_microbiome’s past year of commit activity
    R 8 GPL-3.0 0 0 0 Updated Apr 20, 2023
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