Honours project on oral Campylobacter spp. and their relation to periodontal disease
Welsh, Brady L.
These notebooks provide detailed outlines for methods used throughout this project including all code used for the processing and analysis of sequencing data.
The files throughout this repository are numbered in the order in which they were run.
- ACAD sequence data
- Raw sequencing data (fastq format) obtained from the Australian Center of Ancient DNA
- Metadata?
- HMP sequence data
- Raw sequencing data (fastq format) downloaded from the Human Microbiome Project website
- Metadata downloaded from the HMP website
- Periodontal Pocket sequence data
- Processed sequencing data (fasta format) downloaded from project completed by Shi et al. (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5938363/)
Supervisors: Dr. Laura Weyrich and Dr. Raphael Eisenhofer
Australian Center of Ancient DNA (ACAD)
The University of Adelaide