Merge pull request #3 from breimanntools/dev_scripts

Dev scripts
breimanntools · Feb 13, 2024 · fe7cef0 · fe7cef0
2 parents 5ab758b + 4e1c766
commit fe7cef0
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Showing 19 changed files with 12 additions and 276 deletions.
diff --git a/.gitignore b/.gitignore
@@ -1,10 +1,14 @@
 # Directories
 /venv/
-#/dev_scripts/
+/dev_scripts/
 /recipe/
 /tutorials/.ipynb_checkpoints/
 /dist/
 
+# Created documentation
+/docs/build/
+/docs/source/generated/
+
 # IDEs & Editors
 ## PyCharm
 /.idea/
@@ -25,6 +29,11 @@ Thumbs.db
 __pycache__/
 *.py[cod]
 *$py.class
+**/__pycache__/
+
+# Hypothesis
+.hypothesis/
+.coverage
 
 ## C extensions
 *.so
@@ -119,3 +128,5 @@ dmypy.json
 
 # Cython
 cython_debug/
+/venv_shap/
+/dev_scripts/
diff --git a/dev_scripts/__init__.py b/dev_scripts/__init__.py
diff --git a/dev_scripts/_utils.py b/dev_scripts/_utils.py
diff --git a/dev_scripts/data/.~lock.LIPID_DEMYLINATION.tsv# b/dev_scripts/data/.~lock.LIPID_DEMYLINATION.tsv#
diff --git a/dev_scripts/data/Demyelination_dpi0_vs_dpi7.xlsx b/dev_scripts/data/Demyelination_dpi0_vs_dpi7.xlsx
diff --git a/dev_scripts/data/Demyelination_dpi0_vs_dpi7_.xlsx b/dev_scripts/data/Demyelination_dpi0_vs_dpi7_.xlsx
diff --git a/dev_scripts/data/raw_data_proteomics_lfq.xlsx b/dev_scripts/data/raw_data_proteomics_lfq.xlsx
diff --git a/dev_scripts/dev_cimpute.py b/dev_scripts/dev_cimpute.py
diff --git a/dev_scripts/dev_data.py b/dev_scripts/dev_data.py
diff --git a/dev_scripts/results/LIPID_DEMYLINATION_SIG.xlsx b/dev_scripts/results/LIPID_DEMYLINATION_SIG.xlsx
diff --git a/dev_scripts/results/PROT_DEMYLINATION_SIG.xlsx b/dev_scripts/results/PROT_DEMYLINATION_SIG.xlsx
diff --git a/dev_scripts/results/cImpute_data_proteomics_lfq.xlsx b/dev_scripts/results/cImpute_data_proteomics_lfq.xlsx
diff --git a/dev_scripts/results/cImpute_histogram_proteomics_lfq.png b/dev_scripts/results/cImpute_histogram_proteomics_lfq.png
diff --git a/dev_scripts/results/cImpute_scatterA_proteomics_lfq.png b/dev_scripts/results/cImpute_scatterA_proteomics_lfq.png
diff --git a/dev_scripts/results/cImpute_scatterB_proteomics_lfq.png b/dev_scripts/results/cImpute_scatterB_proteomics_lfq.png
diff --git a/dev_scripts/results/cImpute_scatterC_proteomics_lfq.png b/dev_scripts/results/cImpute_scatterC_proteomics_lfq.png
diff --git a/dev_scripts/results/cImpute_scatterD_proteomics_lfq.png b/dev_scripts/results/cImpute_scatterD_proteomics_lfq.png
diff --git a/dev_scripts/results/cImpute_scatterE_proteomics_lfq.png b/dev_scripts/results/cImpute_scatterE_proteomics_lfq.png
diff --git a/dev_scripts/results/cImpute_scatterF_proteomics_lfq.png b/dev_scripts/results/cImpute_scatterF_proteomics_lfq.png