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add link to paper
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brentp committed Jun 19, 2019
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# duphold: uphold your DUP and DEL calls

The paper describing `duphold` is available [here](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6479422/)

SV callers like [lumpy](https://github.com/arq5x/lumpy) look at split-reads and pair distances to find structural variants.
This tool is a fast way to add depth information to those calls. This can be used as additional
information for filtering variants; for example **we will be skeptical of deletion calls that
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