error om encoding dbsnp - "Large file option has not been set". echtvar 0.1.7

[ruslan-abasov]

./echtvar encode dbsnp.echtvar.zip dnsnp.etchvar.json dnsnp.vcf.gz
[echtvar] adding VCF:/data1/mnt/LMBALL/RefData_VMP01/annotation/variation/dbsnp/156/hg38/ready.vcf.gz
[echtvar] on chromosome "1"
[warning] found non ACGT ALT character 'N', encoding as 'T' for (1-based) position: 1612563
[warning] found non ACGT ALT character 'N', encoding as 'T' for (1-based) position: 4522956
[warning] found non ACGT ALT character 'N', encoding as 'T' for (1-based) position: 4522956
[warning] found non ACGT ALT character 'N', encoding as 'T' for (1-based) position: 10012946
[warning] found non ACGT ALT character 'N', encoding as 'T' for (1-based) position: 11544538
[warning] found non ACGT ALT character 'N', encoding as 'T' for (1-based) position: 12854354
[warning] found non ACGT ALT character 'N', encoding as 'T' for (1-based) position: 15827828
[warning] found non ACGT ALT character 'N', encoding as 'T' for (1-based) position: 15974201
[warning] found non ACGT ALT character 'N', encoding as 'T' for (1-based) position: 15974201
[warning] found non ACGT ALT character 'N', encoding as 'T' for (1-based) position: 16062393
[echtvar] on chromosome "2"
[echtvar] on chromosome "3"
[echtvar] on chromosome "4"
[echtvar] on chromosome "5"
[echtvar] on chromosome "6"
[echtvar] on chromosome "7"
[echtvar] on chromosome "8"
[echtvar] on chromosome "9"
[echtvar] on chromosome "10"
[echtvar] on chromosome "11"
[echtvar] on chromosome "12"
[echtvar] on chromosome "13"
[echtvar] on chromosome "14"
[echtvar] on chromosome "15"
[echtvar] on chromosome "16"
[echtvar] on chromosome "17"
[echtvar] on chromosome "18"
[echtvar] on chromosome "19"
[echtvar] on chromosome "20"
[echtvar] on chromosome "21"
[echtvar] on chromosome "22"
[echtvar] on chromosome "X"
[echtvar] on chromosome "Y"
[echtvar] on chromosome "M"
[echtvar] found 1096965712 unique values for dbsnpid)
thread 'main' panicked at 'error writing to zip file: Custom { kind: Other, error: "Large file option has not been set" }', >src/commands/encoder_cmd.rs:462:31
note: run with RUST_BACKTRACE=1 environment variable to display a backtrace

[brentp]

hmm. thanks for reporting.
I do have large file set on the entire archive, but here, I update to include on each individual file as well. Would you try this binary and let me know if it works? Just gunzip, chmod +x and run as ./echtvar_dev ...

echtvar_dev.gz

[ruslan-abasov]

Thanks! Works great!

[brentp]

thanks for following up. I pushed a new release with this fix and other small changes:
https://github.com/brentp/echtvar/releases/tag/v0.1.8