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does smoove take other sv caller genotypes into account? #240

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olivia-gc opened this issue May 14, 2024 · 1 comment
Open

does smoove take other sv caller genotypes into account? #240

olivia-gc opened this issue May 14, 2024 · 1 comment

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@olivia-gc
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Hi,
I am currently running smoove on manta outputs and wanted to know if smoove genotypes based on lumpy or does it only consider the existing genotyping generated by manta?
Thank you!
@brentp
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brentp commented May 14, 2024

Hi. No, it does not.

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@brentp @olivia-gc