Skip to content

Issues: brentp/smoove

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

98 Open 142 Closed
98 Open 142 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Check whether the software is running properly
#251 opened Dec 22, 2024 by duan12345678
smoove genotype error, panic: runtime error: invalid memory address or nil pointer dereference
#250 opened Oct 9, 2024 by kuangzhuoran
1
Smoove docker cannot access files!
#249 opened Sep 27, 2024 by Martaprf
7
Smoove filters out almost all reads when using BAMs of a 1.5 Mb region of the genome
#248 opened Jul 28, 2024 by Alexei-Lipov
problem “Could not parse the header line”
#246 opened Jul 13, 2024 by C-YONG
1
smoove paste error for DEL
#244 opened Jun 26, 2024 by olivia-gc
1
smoove call for tumor/normal pairs
#243 opened Jun 25, 2024 by TLyan-ze
2
how is option '--support' (mininum support required to report a variant) defined?
#241 opened Jun 13, 2024 by yqlan
does smoove take other sv caller genotypes into account?
#240 opened May 14, 2024 by olivia-gc
1
Outdated version of bcftools in dockerfile: "Unsorted positions", position 0 vs. 4294967296
#239 opened Mar 12, 2024 by bartgrantham
library error in smoove
#237 opened Jan 17, 2024 by poddarharsh15
4
only histo file outputs from smoove call
#235 opened Dec 5, 2023 by Ana1335
5
lumpy_filter not on $PATH
#234 opened Nov 23, 2023 by Sreelekshmi-291
1
Failed to open -: unknown file type, panic
#233 opened Nov 9, 2023 by lilymaya
5
smoove paste error
#231 opened Oct 6, 2023 by ygwang1
5
smoove genotype - could not import: bam_hdr_destroy
#230 opened Sep 7, 2023 by heidihyang
9
Multiple issues
#229 opened Sep 6, 2023 by carsonhh
Why REF = N?
#228 opened Aug 25, 2023 by robertzeibich
1
When I use smoove annotate, I just receive a MSHQ/SHQ of -1
#225 opened Aug 11, 2023 by robertzeibich
12
smoove call fails immediately with Panic: unexpected EOF
#222 opened Jul 14, 2023 by Ax3man
2
【need help】An error occurred when running to Merge
#221 opened Jul 13, 2023 by SolarQuiltc
2
Polyploidy
#220 opened Jul 4, 2023 by goeckeritz
3
Different genotype of SV for the same sample in different batch
#219 opened Jun 19, 2023 by lemon-latte
non-SV filtering
#215 opened Mar 2, 2023 by torakichi1219
2
sanity checks for sorted and RGs
#214 opened Feb 17, 2023 by hemstrow
1
ProTip! Type g i on any issue or pull request to go back to the issue listing page.