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Releases: broadinstitute/ABC-Enhancer-Gene-Prediction

ABCv1.1.2

23 Mar 00:16
dd637b6
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Improve testing infra
Update gene reference files (hg38 and hg19)
Better column naming for predictions

ABCv1.1.1

07 Mar 05:36
8345d2f
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fix qnorm bug

ABCv1.1.0

06 Mar 05:23
813a182
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Updated HiC processing
Automatic threshold determination

ABCv1.0.0

06 Dec 23:31
a8a60d3
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ABC Revamp focusing on usability along with additional features and model performance

ABC v0.2.2

17 Apr 18:33
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Allow running of model in ATAC/DHS only mode.
Other improvements and bug fixes.

ABC v0.2.1

15 Jan 20:03
5054a12
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  • Improve support for contact data in bedpe format.
  • Hi-C data is now optional, if not provided code will compute powerlaw model only
  • Other minor improvements and fixes.

ABC v0.2

14 Nov 16:15
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Rewrite of Hi-C pipeline to take in Hi-C matrices instead of 'virtual 4c' bedgraphs.

First public release

v0.1.1 - bug fix

10 Oct 15:41
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fixed typo in outDir flag

ABC v0.1

20 Sep 19:06
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Tag initial release of ABC model code