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WX-853 Remove most CWL (#6955)
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aednichols authored Dec 1, 2022
1 parent e0c8dd0 commit 2be0787
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5 changes: 5 additions & 0 deletions CHANGELOG.md
Original file line number Diff line number Diff line change
Expand Up @@ -54,6 +54,11 @@ languages {
}
```

### CWL implementation removed

This release removes the `cwl` top-level artifact. Some nonfunctional references may remain, and will be addressed over time.

For more information, see the [Cromwell 79 release notes](https://github.com/broadinstitute/cromwell/releases/tag/79).

## 84 Release Notes

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27 changes: 0 additions & 27 deletions build.sbt
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Expand Up @@ -74,12 +74,6 @@ lazy val wdlTransformsBiscayne = (project in wdlTransformsRoot / "biscayne")
.dependsOn(common % "test->test")
.dependsOn(wom % "test->test")

lazy val cwl = project
.withLibrarySettings("cromwell-cwl", cwlDependencies)
.dependsOn(wom)
.dependsOn(wom % "test->test")
.dependsOn(common % "test->test")

lazy val core = project
.withLibrarySettings("cromwell-core", coreDependencies)
.dependsOn(wom)
Expand Down Expand Up @@ -183,7 +177,6 @@ lazy val services = project
.dependsOn(wdlDraft2LanguageFactory % "test->test") // because the WaaS tests init language config with all languages
.dependsOn(wdlDraft3LanguageFactory % "test->test")
.dependsOn(wdlBiscayneLanguageFactory % "test->test")
.dependsOn(cwlV1_0LanguageFactory % "test->test")
.dependsOn(core % "test->test")
.dependsOn(ftpFileSystem % "test->test")
.dependsOn(common % "test->test")
Expand Down Expand Up @@ -264,7 +257,6 @@ lazy val engine = project
.dependsOn(azureBlobFileSystem % "test->test")
.dependsOn(`cloud-nio-spi`)
.dependsOn(languageFactoryCore)
.dependsOn(cwlV1_0LanguageFactory % "test->test")
.dependsOn(wdlDraft2LanguageFactory % "test->test")
.dependsOn(wdlDraft3LanguageFactory % "test->test")
.dependsOn(wdlBiscayneLanguageFactory % "test->test")
Expand All @@ -279,20 +271,11 @@ lazy val engine = project

// Executables

lazy val centaurCwlRunner = project
.withExecutableSettings("centaur-cwl-runner", centaurCwlRunnerDependencies, buildDocker = false)
.dependsOn(cwl)
.dependsOn(centaur)
.dependsOn(gcsFileSystem)
.dependsOn(ftpFileSystem)
.dependsOn(common % "test->test")

lazy val womtool = project
.withExecutableSettings("womtool", womtoolDependencies)
.dependsOn(wdlDraft2LanguageFactory)
.dependsOn(wdlDraft3LanguageFactory)
.dependsOn(wdlBiscayneLanguageFactory)
.dependsOn(cwlV1_0LanguageFactory)
.dependsOn(wom % "test->test")
.dependsOn(common % "test->test")

Expand Down Expand Up @@ -338,12 +321,6 @@ lazy val wdlBiscayneLanguageFactory = (project in languageFactoryRoot / "wdl-bis
.dependsOn(wdlTransformsBiscayne)
.dependsOn(common % "test->test")

lazy val cwlV1_0LanguageFactory = (project in languageFactoryRoot / "cwl-v1-0")
.withLibrarySettings("cwl-v1-0")
.dependsOn(languageFactoryCore)
.dependsOn(cwl)
.dependsOn(common % "test->test")

lazy val `cloud-nio-spi` = (project in cloudNio / "cloud-nio-spi")
.withLibrarySettings(libraryName = "cloud-nio-spi", dependencies = spiDependencies)
.dependsOn(common % "test->test")
Expand Down Expand Up @@ -386,7 +363,6 @@ lazy val server = project
.dependsOn(wdlDraft2LanguageFactory)
.dependsOn(wdlDraft3LanguageFactory)
.dependsOn(wdlBiscayneLanguageFactory)
.dependsOn(cwlV1_0LanguageFactory)
.dependsOn(engine % "test->test")
.dependsOn(common % "test->test")

Expand All @@ -403,14 +379,11 @@ lazy val root = (project in file("."))
.aggregate(azureBlobFileSystem)
.aggregate(backend)
.aggregate(centaur)
.aggregate(centaurCwlRunner)
.aggregate(cloudSupport)
.aggregate(common)
.aggregate(core)
.aggregate(cromiam)
.aggregate(cromwellApiClient)
.aggregate(cwl)
.aggregate(cwlV1_0LanguageFactory)
.aggregate(databaseMigration)
.aggregate(databaseSql)
.aggregate(dockerHashing)
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19 changes: 0 additions & 19 deletions centaur/src/main/resources/integrationTestCases/bcbio_rnaseq.test

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22 changes: 0 additions & 22 deletions centaur/src/main/resources/integrationTestCases/bcbio_somatic.test

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22 changes: 0 additions & 22 deletions centaur/src/main/resources/integrationTestCases/bcbio_svcall.test

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