AWS-EFS postmapping fix

[nvanaja]

Added AWS-EFS expression post mapping function so the output expressions with files with relative paths get mapped to the correct path.

[nvanaja]

Hi,
Pl let me know how long it will take for this pull request to be reviewed?
Thanks,
Vanaja

[nvanaja]

Hi,
Could some one please review this change? We need this fix.
Also, BUILD_TYPE=horicromtalDeadlock seems to fail. How do I fix that?
Thanks,
Vanaja

[cjllanwarne]

hi @nvanaja - we discussed this internally and there was some thought that this PR might possibly be unnecessary now with the changes in Cromwell 52 (especially PRs #5468 and #5554).

Would you mind confirming that this change is still needed - and if so we'll look to have it reviewed as part of our current sprint?

Thanks!

[nvanaja]

Hi @cjllanwarne Thanks for the update. I looked at #5468 and #5554 changes made. They all S3 related changes/enghancements. This fix is EFS specific and hence not addressed by the above two. So this change is needed.
Thanks,
Vanaja

[markjschreiber]

Looks good from a code perspective. Would be good to see if the Cromwell team can support Centaur tests with this configuration. This would presumably require a different environment from the current AWS test environment which uses S3 rather than EFS.

[grsterin]

Hi @nvanaja. Please revert file permissions change for backend/src/main/scala/cromwell/backend/standard/StandardAsyncExecutionActor.scala

[nvanaja]

Hi @nvanaja. Please revert file permissions change for backend/src/main/scala/cromwell/backend/standard/StandardAsyncExecutionActor.scala

Done.