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WX-1179 GCP Batch new base#7177

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aednichols merged 234 commits intodevelopbroadinstitute/cromwell:developfrom aen-gcp-batch-07-17broadinstitute/cromwell:aen-gcp-batch-07-17Copy head branch name to clipboardJul 31, 2023

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Commits on May 3, 2023

• Initial commit of google cloud backend. Updates project dependencies and build sbt.

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Commits on May 4, 2023

• Updated BigQuery dependency to test resolving integration test issues with compatability with google-api-client.

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• Updated GCP KMS dependency to test resolving integration test issues with compatability with google-api-client.

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Commits on May 10, 2023

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• Added the Batch doc and GcpBatch conf file

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• Add Runnable Command test. Update localization var names

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Commits on May 19, 2023

• add in localization test

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Commits on May 22, 2023

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• Burwood dockerhub credentials (#7141)

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Commits on May 23, 2023

• test adding hello test

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Commits on May 24, 2023

• fix test after adding docker auth

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Commits on May 25, 2023

• remove endpoint url

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Commits on Jun 8, 2023

• Add genomics url back in.

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Commits on Jun 12, 2023

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Commits on Jun 15, 2023

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Commits on Jun 16, 2023

• Fixed typo in generateGlobFileOutputs that was switching directory to file outputs. Fixed unsuccessful run status. Removed unused commented out methods.

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Commits on Jun 19, 2023

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• Remove commented out unused code. Remove pipeline name from methods.

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Commits on Jun 20, 2023

• fix input mirror test. Issue with job output validation.

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• Tests now pass with cache config added to backend config. Change entrypoint from null to blank string.

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Commits on Jun 21, 2023

• Remove exclusion from passing test

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Commits on Jun 22, 2023

• Fix additional labels Google requested. Remove unused code commented out and debugs.

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• Remove SRA as it is no longer used. Removed unused comments.

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• Removed unused network conversions. Handled with network labels.

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Commits on Jun 28, 2023

• Add runnable labels as it is now supported in Batch. Updates batch version. Removed commented code.

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• Add set environment to runnable. Used for background tasks.

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Commits on Jun 30, 2023

• Additional label support, changed provider name, updated name in tests, cleanup of todos in comments

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Commits on Jul 11, 2023

• Initial commit of google cloud backend. Updates project dependencies and build sbt.

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• Updated BigQuery dependency to test resolving integration test issues with compatability with google-api-client.

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• Updated GCP KMS dependency to test resolving integration test issues with compatability with google-api-client.

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• Added 101 guide in tutorials directory

  

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• add in execution actor test and associated fixes

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• Burwood dockerhub credentials (#7141)

  

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• Update Batch101.md

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• test adding hello test

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• test adding genomics url

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• Remove commented out unused code. Remove pipeline name from methods.

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• fix input mirror test. Issue with job output validation.

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• Tests now pass with cache config added to backend config. Change entrypoint from null to blank string.

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• Remove exclusion from passing test

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• Fix additional labels Google requested. Remove unused code commented out and debugs.

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• Remove SRA as it is no longer used. Removed unused comments.

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• Removed unused network conversions. Handled with network labels.

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• Add runnable labels as it is now supported in Batch. Updates batch version. Removed commented code.

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• Add set environment to runnable. Used for background tasks.

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• Additional label support, changed provider name, updated name in tests, cleanup of todos in comments

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• Added 101 guide in tutorials directory

  

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• fix input mirror test. Issue with job output validation.

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• Remove SRA as it is no longer used. Removed unused comments.

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• Removed unused network conversions. Handled with network labels.

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• Add set environment to runnable. Used for background tasks.

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• Additional label support, changed provider name, updated name in tests, cleanup of todos in comments

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• Updated BigQuery dependency to test resolving integration test issues with compatability with google-api-client.

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