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Make GATKSVPipelineSingleSample validate it in MiniWDL #154

Merged
merged 11 commits into from
Jun 15, 2021
Merged

Make GATKSVPipelineSingleSample validate it in MiniWDL #154

merged 11 commits into from
Jun 15, 2021

Commits on Apr 26, 2021

  1. Make MiniWDL fixes

    @illusional
    illusional committed Apr 26, 2021
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Commits on May 12, 2021

  1. Apply task defaults separately

    @illusional
    illusional committed May 12, 2021
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  2. Make defragment_max_dist optional again

    @illusional
    illusional committed May 12, 2021
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Commits on May 13, 2021

  1. Fix names so they validate in Cromwell

    @illusional
    illusional committed May 13, 2021
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  2. Remove intermediate default applications

    @illusional
    illusional committed May 13, 2021
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  3. Address review feedback

    @illusional
    illusional committed May 13, 2021
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Commits on May 14, 2021

  1. Remove old variables

    @illusional
    illusional committed May 14, 2021
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  2. Revert if consequent and alternative type changes

    @illusional
    illusional committed May 14, 2021
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Commits on May 21, 2021

  1. Address further review feedback

    @illusional
    illusional committed May 21, 2021
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  2. Revert select_first([]) defaults due to Cromwell grammar issue

    @illusional
    illusional committed May 21, 2021
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Commits on Jun 14, 2021

  1. Use if defined over select_first

    @illusional
    illusional committed Jun 14, 2021
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