Passing implementation of custom ploidy regions in HaplotypeCaller #3512

Job	Run time
check if the environment has privileges	1s
Validate generated WDLs using womtools	13m 13s
build and push gatk docker to artifacts	23m 2s
Validate script WDLs using womtools	52s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	26m 51s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	29m 11s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	28m 5s
WDL test RUN_M2_WDL on cromwell	21m 28s
WDL test RUN_CNN_WDL on cromwell	20m 14s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	16m 30s
Java 17.0.6+10 build and test cloud	25m 33s
Java 17.0.6+10 build and test integration	33m 40s
Java 17.0.6+10 build and test unit	21m 50s
Java 17.0.6+10 test on docker integration	41m 23s
Java 17.0.6+10 test on docker unit	24m 24s
Java 17.0.6+10 test on docker variantcalling	32m 21s
Java 17.0.6+10 test on docker conda	30m 1s
	6h 28m 39s

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