Make M2 haplotype and clustered events filters smarter about germline events #3941

Job	Run time
Validate generated WDLs using womtools	13m 18s
check if the environment has privileges	1s
build and push gatk docker to artifacts	23m 4s
Validate script WDLs using womtools	52s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	28m 31s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	30m 24s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	27m 3s
WDL test RUN_M2_WDL on cromwell	18m 28s
WDL test RUN_CNN_WDL on cromwell	16m 26s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	13m 7s
Java 17.0.6+10 build and test cloud	14m 50s
Java 17.0.6+10 build and test integration	31m 26s
Java 17.0.6+10 build and test unit	21m 11s
Java 17.0.6+10 test on docker integration	36m 35s
Java 17.0.6+10 test on docker unit	24m 5s
Java 17.0.6+10 test on docker variantcalling	29m 42s
Java 17.0.6+10 test on docker conda	33m 14s
	6h 2m 17s

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